RNA–Protein interactions for RNA: ENST00000347662.8

TRAF3-201, Transcript of TNF receptor associated factor 3, humanhuman

TSL 5 BASIC

Gene TRAF3, Length 7,700 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF3-201ENST00000347662 DCAF8L2P0C7V8 631 aa20.79■□□□□ 0.92
TRAF3-201ENST00000347662 NISCHQ9Y2I1 1504 aa19.29■□□□□ 0.68
TRAF3-201ENST00000347662 SUPT5HO00267 1087 aaKnown RBP19.21■□□□□ 0.67
TRAF3-201ENST00000347662 PELP1Q8IZL8 1130 aaKnown RBP19.21■□□□□ 0.67
TRAF3-201ENST00000347662 SHROOM4Q9ULL8 1493 aa19.05■□□□□ 0.64
TRAF3-201ENST00000347662 EHMT2Q96KQ7 1210 aa18.88■□□□□ 0.61
TRAF3-201ENST00000347662 ERICH6Q7L0X2 663 aa18.74■□□□□ 0.59
TRAF3-201ENST00000347662 CCER1Q8TC90 406 aaPredicted RBP18.38■□□□□ 0.53
TRAF3-201ENST00000347662 APLP2Q06481 763 aa18.34■□□□□ 0.53
TRAF3-201ENST00000347662 FAM9AQ8IZU1 332 aaPredicted RBP18.3■□□□□ 0.52
TRAF3-201ENST00000347662 MYT1Q01538 1121 aa18.29■□□□□ 0.52
TRAF3-201ENST00000347662 TTBK1Q5TCY1 1321 aaPredicted RBP18.15■□□□□ 0.5
TRAF3-201ENST00000347662 RANGAP1P46060 587 aaPredicted RBP18.12■□□□□ 0.49
TRAF3-201ENST00000347662 ATP1B4Q9UN42 357 aaPredicted RBP17.94■□□□□ 0.46
TRAF3-201ENST00000347662 DAXXQ9UER7 740 aaPredicted RBP17.81■□□□□ 0.44
TRAF3-201ENST00000347662 NEFLP07196 543 aa17.8■□□□□ 0.44
TRAF3-201ENST00000347662 CENPBP07199 599 aaPredicted RBP17.78■□□□□ 0.44
TRAF3-201ENST00000347662 PCGF6Q9BYE7 350 aa17.75■□□□□ 0.43
TRAF3-201ENST00000347662 TRIM41Q8WV44 630 aa17.69■□□□□ 0.42
TRAF3-201ENST00000347662 UBTFP17480 764 aaKnown RBP17.62■□□□□ 0.41
TRAF3-201ENST00000347662 YTHDC1Q96MU7 727 aaKnown RBP17.61■□□□□ 0.41
TRAF3-201ENST00000347662 MYT1LQ9UL68 1186 aa17.55■□□□□ 0.4
TRAF3-201ENST00000347662 CHIC1Q5VXU3 224 aa17.47■□□□□ 0.39
TRAF3-201ENST00000347662 POLR3GLQ9BT43 218 aa17.47■□□□□ 0.39
TRAF3-201ENST00000347662 SLC4A1APQ9BWU0 796 aaKnown RBP17.39■□□□□ 0.37
TRAF3-201ENST00000347662 CNGB1Q14028 1251 aaPredicted RBP17.36■□□□□ 0.37
TRAF3-201ENST00000347662 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.35■□□□□ 0.37
TRAF3-201ENST00000347662 HNRNPUL2Q1KMD3 747 aaKnown RBP17.35■□□□□ 0.37
TRAF3-201ENST00000347662 PPARGC1BQ86YN6 1023 aaKnown RBP17.34■□□□□ 0.37
TRAF3-201ENST00000347662 ABCC9O60706 1549 aa17.29■□□□□ 0.36
TRAF3-201ENST00000347662 ZNF316A6NFI3 1004 aaPredicted RBP17.29■□□□□ 0.36
TRAF3-201ENST00000347662 PABPN1Q86U42 306 aaKnown RBP eCLIP17.28■□□□□ 0.36
TRAF3-201ENST00000347662 CLSPNQ9HAW4 1339 aa17.24■□□□□ 0.35
TRAF3-201ENST00000347662 ITGAEP38570 1179 aa17.15■□□□□ 0.34
TRAF3-201ENST00000347662 ZEB1P37275 1124 aaPredicted RBP17.12■□□□□ 0.33
TRAF3-201ENST00000347662 RTL5Q5HYW3 569 aaPredicted RBP17.1■□□□□ 0.33
TRAF3-201ENST00000347662 SLC24A1O60721 1099 aa17.03■□□□□ 0.32
TRAF3-201ENST00000347662 BCL11AQ9H165 835 aa17.02■□□□□ 0.32
TRAF3-201ENST00000347662 FBLN2P98095 1184 aa16.9■□□□□ 0.3
TRAF3-201ENST00000347662 ZBTB47Q9UFB7 747 aaPredicted RBP16.9■□□□□ 0.3
TRAF3-201ENST00000347662 LOC105371045A0A1W2PR82 267 aa16.87■□□□□ 0.29
TRAF3-201ENST00000347662 FAM50AQ14320 339 aaKnown RBP16.64■□□□□ 0.25
TRAF3-201ENST00000347662 BCANQ96GW7 911 aa16.6■□□□□ 0.25
TRAF3-201ENST00000347662 ARID3CA6NKF2 412 aa16.6■□□□□ 0.25
TRAF3-201ENST00000347662 TRIM26Q12899 539 aaPredicted RBP16.58■□□□□ 0.24
TRAF3-201ENST00000347662 CANXP27824 592 aaKnown RBP16.56■□□□□ 0.24
TRAF3-201ENST00000347662 TRIM52Q96A61 297 aa16.53■□□□□ 0.24
TRAF3-201ENST00000347662 P3H3Q8IVL6 736 aa16.5■□□□□ 0.23
TRAF3-201ENST00000347662 EIF5BO60841 1220 aaKnown RBP16.48■□□□□ 0.23
TRAF3-201ENST00000347662 PLPPR3Q6T4P5 718 aa16.44■□□□□ 0.22
TRAF3-201ENST00000347662 CDK11BP21127 795 aaKnown RBP16.43■□□□□ 0.22
TRAF3-201ENST00000347662 CDK11AQ9UQ88 783 aaPredicted RBP16.43■□□□□ 0.22
TRAF3-201ENST00000347662 NEFMP07197 916 aa16.43■□□□□ 0.22
TRAF3-201ENST00000347662 ANP32BQ92688 251 aaKnown RBP16.42■□□□□ 0.22
TRAF3-201ENST00000347662 ZNF326Q5BKZ1 582 aaKnown RBP16.4■□□□□ 0.22
TRAF3-201ENST00000347662 NEUROD1Q13562 356 aa16.38■□□□□ 0.21
TRAF3-201ENST00000347662 HSP90AA1P07900 732 aaKnown RBP16.34■□□□□ 0.21
TRAF3-201ENST00000347662 SCRIBQ14160 1630 aa16.32■□□□□ 0.2
TRAF3-201ENST00000347662 ZNF777Q9ULD5 760 aaPredicted RBP16.32■□□□□ 0.2
TRAF3-201ENST00000347662 NPM2Q86SE8 214 aaKnown RBP16.29■□□□□ 0.2
TRAF3-201ENST00000347662 TULP1O00294 542 aaPredicted RBP16.26■□□□□ 0.19
TRAF3-201ENST00000347662 A0A0G2JS52 829 aa16.24■□□□□ 0.19
TRAF3-201ENST00000347662 HRCP23327 699 aa16.24■□□□□ 0.19
TRAF3-201ENST00000347662 ESF1Q9H501 851 aaKnown RBP16.22■□□□□ 0.19
TRAF3-201ENST00000347662 GLIPR1L2Q4G1C9 344 aa16.19■□□□□ 0.18
TRAF3-201ENST00000347662 NPM1P06748 294 aaKnown RBP eCLIP16.19■□□□□ 0.18
TRAF3-201ENST00000347662 ARXQ96QS3 562 aa16.18■□□□□ 0.18
TRAF3-201ENST00000347662 ANP32AP39687 249 aaKnown RBP16.17■□□□□ 0.18
TRAF3-201ENST00000347662 NCBP3Q53F19 620 aaKnown RBP16.17■□□□□ 0.18
TRAF3-201ENST00000347662 SCAF1Q9H7N4 1312 aaKnown RBP16.13■□□□□ 0.17
TRAF3-201ENST00000347662 CHGAP10645 457 aaKnown RBP16.12■□□□□ 0.17
TRAF3-201ENST00000347662 ANP32CO43423 234 aa16.11■□□□□ 0.17
TRAF3-201ENST00000347662 DIEXFQ68CQ4 756 aaKnown RBP16.1■□□□□ 0.17
TRAF3-201ENST00000347662 CSRNP3Q8WYN3 585 aa16.1■□□□□ 0.17
TRAF3-201ENST00000347662 STAG3Q9UJ98 1225 aa16.1■□□□□ 0.17
TRAF3-201ENST00000347662 UPF2Q9HAU5 1272 aaKnown RBP16.02■□□□□ 0.16
TRAF3-201ENST00000347662 CHMP7Q8WUX9 453 aaPredicted RBP16.01■□□□□ 0.15
TRAF3-201ENST00000347662 SENP3Q9H4L4 574 aaPredicted RBP15.98■□□□□ 0.15
TRAF3-201ENST00000347662 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.97■□□□□ 0.15
TRAF3-201ENST00000347662 PLEKHG5O94827 1062 aa15.96■□□□□ 0.15
TRAF3-201ENST00000347662 CHIC2Q9UKJ5 165 aa15.9■□□□□ 0.14
TRAF3-201ENST00000347662 ZBTB7CA1YPR0 619 aa15.88■□□□□ 0.13
TRAF3-201ENST00000347662 KCNH8Q96L42 1107 aa15.88■□□□□ 0.13
TRAF3-201ENST00000347662 GTF3C3Q9Y5Q9 886 aa15.88■□□□□ 0.13
TRAF3-201ENST00000347662 NBR1Q14596 966 aa15.85■□□□□ 0.13
TRAF3-201ENST00000347662 TPRNQ4KMQ1 711 aa15.84■□□□□ 0.13
TRAF3-201ENST00000347662 RB1CC1Q8TDY2 1594 aa15.84■□□□□ 0.13
TRAF3-201ENST00000347662 SALL2Q9Y467 1007 aaPredicted RBP15.83■□□□□ 0.12
TRAF3-201ENST00000347662 ZCCHC6Q5VYS8 1495 aaKnown RBP15.81■□□□□ 0.12
TRAF3-201ENST00000347662 TAOK2Q9UL54 1235 aa15.81■□□□□ 0.12
TRAF3-201ENST00000347662 CCDC180Q9P1Z9 1646 aa15.8■□□□□ 0.12
TRAF3-201ENST00000347662 TNNT2P45379 298 aaPredicted RBP15.78■□□□□ 0.12
TRAF3-201ENST00000347662 CLSTN1O94985 981 aa15.77■□□□□ 0.11
TRAF3-201ENST00000347662 ZRSR1Q15695 479 aaKnown RBP15.76■□□□□ 0.11
TRAF3-201ENST00000347662 TSPY4P0CV99 314 aa15.75■□□□□ 0.11
TRAF3-201ENST00000347662 TSPY10P0CW01 314 aa15.75■□□□□ 0.11
TRAF3-201ENST00000347662 ARID4BQ4LE39 1312 aaPredicted RBP15.75■□□□□ 0.11
TRAF3-201ENST00000347662 NCLP19338 710 aaKnown RBP15.75■□□□□ 0.11
TRAF3-201ENST00000347662 ERCC6Q03468 1493 aa15.75■□□□□ 0.11
TRAF3-201ENST00000347662 PRM3Q9NNZ6 103 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms