Protein–RNA interactions for Protein: Q9ULB4

CDH9, Cadherin-9, humanhuman

Predictions only

Length 789 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH9Q9ULB4 AP000812.2-201ENST00000538934 718 ntBASIC16.25■□□□□ 0.19
CDH9Q9ULB4 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC16.25■□□□□ 0.19
CDH9Q9ULB4 RPS24-214ENST00000613865 538 ntTSL 5 BASIC16.25■□□□□ 0.19
CDH9Q9ULB4 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH9Q9ULB4 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH9Q9ULB4 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CDH9Q9ULB4 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC16.25■□□□□ 0.19
CDH9Q9ULB4 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
CDH9Q9ULB4 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH9Q9ULB4 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH9Q9ULB4 KRTAP10-7-201ENST00000609664 1578 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
CDH9Q9ULB4 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
CDH9Q9ULB4 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
CDH9Q9ULB4 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CDH9Q9ULB4 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC16.25■□□□□ 0.19
CDH9Q9ULB4 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CDH9Q9ULB4 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CDH9Q9ULB4 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC16.25■□□□□ 0.19
CDH9Q9ULB4 KRT8P44-201ENST00000441609 1350 ntBASIC16.25■□□□□ 0.19
CDH9Q9ULB4 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CDH9Q9ULB4 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 LRRC59-203ENST00000576448 1531 ntBASIC16.24■□□□□ 0.19
CDH9Q9ULB4 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 C18orf15-201ENST00000623680 2534 ntBASIC16.24■□□□□ 0.19
CDH9Q9ULB4 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 AL138709.1-201ENST00000614840 1693 ntBASIC16.24■□□□□ 0.19
CDH9Q9ULB4 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 THEMIS2-204ENST00000373927 1082 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 AC119751.2-201ENST00000504529 210 ntBASIC16.24■□□□□ 0.19
CDH9Q9ULB4 AC136475.3-203ENST00000525217 617 ntTSL 2 BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 AC125603.2-201ENST00000546835 876 ntTSL 3 BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 KRT90P-201ENST00000549264 1064 ntBASIC16.24■□□□□ 0.19
CDH9Q9ULB4 AC244669.2-201ENST00000612320 853 ntBASIC16.24■□□□□ 0.19
CDH9Q9ULB4 AC133552.6-201ENST00000613406 534 ntBASIC16.24■□□□□ 0.19
CDH9Q9ULB4 COX11-210ENST00000639671 696 ntBASIC16.24■□□□□ 0.19
CDH9Q9ULB4 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 PTPN11-201ENST00000351677 6101 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 AC126365.1-201ENST00000578585 1514 ntBASIC16.24■□□□□ 0.19
CDH9Q9ULB4 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CDH9Q9ULB4 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH9Q9ULB4 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDH9Q9ULB4 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC16.23■□□□□ 0.19
CDH9Q9ULB4 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC16.23■□□□□ 0.19
CDH9Q9ULB4 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDH9Q9ULB4 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC16.23■□□□□ 0.19
CDH9Q9ULB4 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
CDH9Q9ULB4 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC16.23■□□□□ 0.19
CDH9Q9ULB4 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH9Q9ULB4 GUK1-206ENST00000366723 845 ntTSL 5 BASIC16.23■□□□□ 0.19
CDH9Q9ULB4 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC16.23■□□□□ 0.19
CDH9Q9ULB4 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH9Q9ULB4 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.23■□□□□ 0.19
CDH9Q9ULB4 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC16.23■□□□□ 0.19
CDH9Q9ULB4 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDH9Q9ULB4 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC16.23■□□□□ 0.19
CDH9Q9ULB4 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CDH9Q9ULB4 KRT223P-202ENST00000449164 1292 ntBASIC16.23■□□□□ 0.19
CDH9Q9ULB4 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDH9Q9ULB4 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CDH9Q9ULB4 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC16.23■□□□□ 0.19
CDH9Q9ULB4 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC16.23■□□□□ 0.19
CDH9Q9ULB4 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC16.23■□□□□ 0.19
CDH9Q9ULB4 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC16.23■□□□□ 0.19
CDH9Q9ULB4 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
CDH9Q9ULB4 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC16.23■□□□□ 0.19
CDH9Q9ULB4 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
CDH9Q9ULB4 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC16.23■□□□□ 0.19
CDH9Q9ULB4 LARP4-220ENST00000615080 856 ntTSL 5 BASIC16.23■□□□□ 0.19
CDH9Q9ULB4 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 67.3 ms