Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
BEST3Q8N1M1 LINC02228-204ENST00000642115 2962 ntBASIC14.39□□□□□ -0.11
BEST3Q8N1M1 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
BEST3Q8N1M1 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
BEST3Q8N1M1 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC14.39□□□□□ -0.11
BEST3Q8N1M1 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
BEST3Q8N1M1 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
BEST3Q8N1M1 PRPF38B-202ENST00000370022 1591 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
BEST3Q8N1M1 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 ZNF831-201ENST00000371030 9401 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 AIFM2-201ENST00000307864 3243 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 LITAF-201ENST00000339430 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 AP003680.1-201ENST00000598970 3660 ntBASIC14.38□□□□□ -0.11
BEST3Q8N1M1 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 AL133267.1-201ENST00000398220 340 ntBASIC14.38□□□□□ -0.11
BEST3Q8N1M1 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 SNHG11-209ENST00000440918 556 ntTSL 3 BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 SPDYE16-201ENST00000515340 858 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 FES-204ENST00000414248 2327 ntTSL 2 BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
BEST3Q8N1M1 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 NINJ2-201ENST00000305108 1252 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 AL603832.2-201ENST00000566195 2125 ntBASIC14.37□□□□□ -0.11
BEST3Q8N1M1 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 APOBEC3H-206ENST00000613677 730 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC14.37□□□□□ -0.11
BEST3Q8N1M1 EIF4G1-212ENST00000424196 5653 ntTSL 2 BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 126.7 ms