Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 C15orf48-202ENST00000396650 732 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 AL645937.2-201ENST00000396808 931 ntBASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 Z93015.1-201ENST00000451718 390 ntBASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 PDC-202ENST00000497198 1174 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 AC091917.2-201ENST00000505002 744 ntBASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 GCHFR-203ENST00000558670 412 ntTSL 3 BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 SAMD11P1-201ENST00000571429 661 ntBASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 MIR3615-201ENST00000581999 87 ntBASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 KLK3-211ENST00000597483 810 ntTSL 2 BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 AL118558.3-201ENST00000607414 1079 ntBASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 PRKN-211ENST00000615065 261 ntTSL 5 BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 SNX12-206ENST00000622259 661 ntTSL 5 BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 AL133338.1-201ENST00000565695 1517 ntBASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RNFT1Q5M7Z0 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
RNFT1Q5M7Z0 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
RNFT1Q5M7Z0 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.19
RNFT1Q5M7Z0 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 SNAP47-203ENST00000366760 1446 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 FANCA-213ENST00000563673 1694 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 B9D1-201ENST00000261499 908 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 GTSF1-201ENST00000305879 804 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 B9D1-203ENST00000395615 805 ntTSL 3 BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 MIR1247-201ENST00000408206 136 ntBASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 HOMER2P2-201ENST00000451621 847 ntBASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 AC137695.1-201ENST00000604126 489 ntBASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 ENPP7P14-201ENST00000621765 1040 ntBASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 DIDO1-201ENST00000266070 8574 ntAPPRIS ALT2 TSL 5 BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 CTNNB1-210ENST00000453024 2841 ntTSL 2 BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 TMEM198B-201ENST00000471276 1958 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 AC092850.2-201ENST00000623821 2697 ntBASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 AC026691.1-201ENST00000602502 2017 ntBASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 AC105250.1-201ENST00000509378 2057 ntBASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
RNFT1Q5M7Z0 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RNFT1Q5M7Z0 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms