Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 DCUN1D4-202ENST00000381441 4207 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
RFX3P48380 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
RFX3P48380 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC14.6□□□□□ -0.07
RFX3P48380 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC14.6□□□□□ -0.07
RFX3P48380 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC14.6□□□□□ -0.07
RFX3P48380 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RFX3P48380 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC14.59□□□□□ -0.07
RFX3P48380 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC14.59□□□□□ -0.07
RFX3P48380 CGN-201ENST00000271636 5091 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RFX3P48380 SLC6A5-202ENST00000525748 7084 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RFX3P48380 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
RFX3P48380 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RFX3P48380 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC14.59□□□□□ -0.07
RFX3P48380 SYNGR1-203ENST00000328933 4391 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RFX3P48380 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
RFX3P48380 SUGP2-215ENST00000601879 5546 ntAPPRIS P3 TSL 2 BASIC14.59□□□□□ -0.07
RFX3P48380 PI4K2A-201ENST00000370631 4189 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RFX3P48380 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
RFX3P48380 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RFX3P48380 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
RFX3P48380 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC14.59□□□□□ -0.07
RFX3P48380 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RFX3P48380 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
RFX3P48380 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
RFX3P48380 AC241585.1-201ENST00000433527 519 ntBASIC14.59□□□□□ -0.07
RFX3P48380 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC14.59□□□□□ -0.07
RFX3P48380 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
RFX3P48380 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC14.59□□□□□ -0.07
RFX3P48380 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC14.59□□□□□ -0.07
RFX3P48380 RFPL4AP1-201ENST00000530883 850 ntBASIC14.59□□□□□ -0.07
RFX3P48380 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
RFX3P48380 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC14.59□□□□□ -0.07
RFX3P48380 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
RFX3P48380 ORC5-208ENST00000626700 344 ntTSL 3 BASIC14.59□□□□□ -0.07
RFX3P48380 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
RFX3P48380 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC14.59□□□□□ -0.07
RFX3P48380 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC14.59□□□□□ -0.07
RFX3P48380 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RFX3P48380 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RFX3P48380 ADGRG2-207ENST00000379869 4768 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
RFX3P48380 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
RFX3P48380 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC14.59□□□□□ -0.07
RFX3P48380 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RFX3P48380 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
RFX3P48380 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC14.58□□□□□ -0.07
RFX3P48380 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC14.58□□□□□ -0.07
RFX3P48380 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
RFX3P48380 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
RFX3P48380 CYP51A1-201ENST00000003100 3210 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
RFX3P48380 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
RFX3P48380 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
RFX3P48380 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RFX3P48380 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
RFX3P48380 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RFX3P48380 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC14.58□□□□□ -0.08
RFX3P48380 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
RFX3P48380 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC14.58□□□□□ -0.08
RFX3P48380 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RFX3P48380 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RFX3P48380 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RFX3P48380 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RFX3P48380 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
RFX3P48380 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.58□□□□□ -0.08
RFX3P48380 AC136604.1-201ENST00000418535 575 ntBASIC14.58□□□□□ -0.08
RFX3P48380 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.58□□□□□ -0.08
RFX3P48380 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.58□□□□□ -0.08
RFX3P48380 AC055876.3-201ENST00000431496 288 ntBASIC14.58□□□□□ -0.08
RFX3P48380 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC14.58□□□□□ -0.08
RFX3P48380 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC14.58□□□□□ -0.08
RFX3P48380 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
RFX3P48380 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC14.58□□□□□ -0.08
RFX3P48380 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
RFX3P48380 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC14.58□□□□□ -0.08
RFX3P48380 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.58□□□□□ -0.08
RFX3P48380 AC044860.1-202ENST00000559481 777 ntBASIC14.58□□□□□ -0.08
RFX3P48380 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC14.58□□□□□ -0.08
RFX3P48380 AC010336.2-201ENST00000564226 506 ntBASIC14.58□□□□□ -0.08
RFX3P48380 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
RFX3P48380 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC14.58□□□□□ -0.08
RFX3P48380 AC138649.4-201ENST00000612222 287 ntBASIC14.58□□□□□ -0.08
RFX3P48380 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC14.58□□□□□ -0.08
RFX3P48380 AL590560.3-201ENST00000623350 461 ntBASIC14.58□□□□□ -0.08
RFX3P48380 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
RFX3P48380 RAB34-223ENST00000636154 730 ntTSL 2 BASIC14.58□□□□□ -0.08
RFX3P48380 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
RFX3P48380 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC14.58□□□□□ -0.08
RFX3P48380 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC14.58□□□□□ -0.08
RFX3P48380 AL590132.1-202ENST00000638983 4184 ntTSL 5 BASIC14.58□□□□□ -0.08
RFX3P48380 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
RFX3P48380 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
RFX3P48380 RPS6KC1-207ENST00000543470 4227 ntTSL 2 BASIC14.58□□□□□ -0.08
RFX3P48380 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RFX3P48380 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RFX3P48380 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
RFX3P48380 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RFX3P48380 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
RFX3P48380 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RFX3P48380 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
RFX3P48380 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC14.58□□□□□ -0.08
RFX3P48380 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.58□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms