Protein–RNA interactions for Protein: P18887

XRCC1, DNA repair protein XRCC1, humanhuman

Predicted RBP Predictions only

Length 633 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC1P18887 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC15.45■□□□□ 0.06
XRCC1P18887 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
XRCC1P18887 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC15.45■□□□□ 0.06
XRCC1P18887 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.45■□□□□ 0.06
XRCC1P18887 METTL26-204ENST00000397665 558 ntTSL 2 BASIC15.45■□□□□ 0.06
XRCC1P18887 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC15.45■□□□□ 0.06
XRCC1P18887 RPL13P2-201ENST00000440687 659 ntBASIC15.45■□□□□ 0.06
XRCC1P18887 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC15.45■□□□□ 0.06
XRCC1P18887 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC15.45■□□□□ 0.06
XRCC1P18887 AL596325.1-201ENST00000563991 1082 ntBASIC15.45■□□□□ 0.06
XRCC1P18887 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC15.45■□□□□ 0.06
XRCC1P18887 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC15.45■□□□□ 0.06
XRCC1P18887 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC15.45■□□□□ 0.06
XRCC1P18887 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC15.45■□□□□ 0.06
XRCC1P18887 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
XRCC1P18887 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.45■□□□□ 0.06
XRCC1P18887 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
XRCC1P18887 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
XRCC1P18887 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
XRCC1P18887 GRK6-203ENST00000393576 2792 ntTSL 5 BASIC15.45■□□□□ 0.06
XRCC1P18887 PRR23C-201ENST00000413199 2791 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
XRCC1P18887 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC15.45■□□□□ 0.06
XRCC1P18887 AC092127.1-201ENST00000567093 3455 ntBASIC15.45■□□□□ 0.06
XRCC1P18887 C18orf15-201ENST00000623680 2534 ntBASIC15.45■□□□□ 0.06
XRCC1P18887 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
XRCC1P18887 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
XRCC1P18887 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC15.45■□□□□ 0.06
XRCC1P18887 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC15.45■□□□□ 0.06
XRCC1P18887 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
XRCC1P18887 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC15.44■□□□□ 0.06
XRCC1P18887 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
XRCC1P18887 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC15.44■□□□□ 0.06
XRCC1P18887 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
XRCC1P18887 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
XRCC1P18887 DEK-201ENST00000244776 1441 ntTSL 2 BASIC15.44■□□□□ 0.06
XRCC1P18887 AC007686.3-201ENST00000619017 3487 ntBASIC15.44■□□□□ 0.06
XRCC1P18887 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
XRCC1P18887 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC15.44■□□□□ 0.06
XRCC1P18887 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC15.44■□□□□ 0.06
XRCC1P18887 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
XRCC1P18887 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.44■□□□□ 0.06
XRCC1P18887 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
XRCC1P18887 ELMO3-202ENST00000393997 2531 ntAPPRIS P2 TSL 2 BASIC15.44■□□□□ 0.06
XRCC1P18887 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
XRCC1P18887 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC15.44■□□□□ 0.06
XRCC1P18887 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC15.44■□□□□ 0.06
XRCC1P18887 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC15.44■□□□□ 0.06
XRCC1P18887 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
XRCC1P18887 AC136604.1-201ENST00000418535 575 ntBASIC15.44■□□□□ 0.06
XRCC1P18887 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
XRCC1P18887 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC15.44■□□□□ 0.06
XRCC1P18887 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC15.44■□□□□ 0.06
XRCC1P18887 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC15.44■□□□□ 0.06
XRCC1P18887 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
XRCC1P18887 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
XRCC1P18887 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC15.44■□□□□ 0.06
XRCC1P18887 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC15.44■□□□□ 0.06
XRCC1P18887 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC15.44■□□□□ 0.06
XRCC1P18887 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC15.44■□□□□ 0.06
XRCC1P18887 CR383656.12-201ENST00000549567 513 ntBASIC15.44■□□□□ 0.06
XRCC1P18887 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC15.44■□□□□ 0.06
XRCC1P18887 RRP7BP-205ENST00000566851 833 ntBASIC15.44■□□□□ 0.06
XRCC1P18887 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC15.44■□□□□ 0.06
XRCC1P18887 CHCHD2P3-201ENST00000603038 451 ntBASIC15.44■□□□□ 0.06
XRCC1P18887 LINC01115-203ENST00000606068 577 ntBASIC15.44■□□□□ 0.06
XRCC1P18887 CECR7-204ENST00000609932 568 ntTSL 2 BASIC15.44■□□□□ 0.06
XRCC1P18887 AC012645.4-201ENST00000610691 1061 ntBASIC15.44■□□□□ 0.06
XRCC1P18887 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC15.44■□□□□ 0.06
XRCC1P18887 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
XRCC1P18887 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
XRCC1P18887 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
XRCC1P18887 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.44■□□□□ 0.06
XRCC1P18887 AC067930.6-201ENST00000623257 4947 ntBASIC15.44■□□□□ 0.06
XRCC1P18887 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC15.44■□□□□ 0.06
XRCC1P18887 PARN-202ENST00000420015 2360 ntTSL 2 BASIC15.44■□□□□ 0.06
XRCC1P18887 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
XRCC1P18887 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
XRCC1P18887 MARS-233ENST00000628866 2583 ntTSL 5 BASIC15.44■□□□□ 0.06
XRCC1P18887 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC15.44■□□□□ 0.06
XRCC1P18887 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC15.44■□□□□ 0.06
XRCC1P18887 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC15.44■□□□□ 0.06
XRCC1P18887 NEK5-204ENST00000617045 2127 ntAPPRIS P1 TSL 2 BASIC15.44■□□□□ 0.06
XRCC1P18887 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
XRCC1P18887 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC15.44■□□□□ 0.06
XRCC1P18887 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC15.44■□□□□ 0.06
XRCC1P18887 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC15.44■□□□□ 0.06
XRCC1P18887 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
XRCC1P18887 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC15.44■□□□□ 0.06
XRCC1P18887 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
XRCC1P18887 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC15.44■□□□□ 0.06
XRCC1P18887 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.44■□□□□ 0.06
XRCC1P18887 AC063926.2-201ENST00000623766 1308 ntBASIC15.43■□□□□ 0.06
XRCC1P18887 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
XRCC1P18887 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
XRCC1P18887 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
XRCC1P18887 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
XRCC1P18887 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
XRCC1P18887 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
XRCC1P18887 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
XRCC1P18887 ELAVL3-201ENST00000359227 4729 ntAPPRIS P3 TSL 3 BASIC15.43■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 32.8 ms