Protein–RNA interactions for Protein: P09493

TPM1, Tropomyosin alpha-1 chain, humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1P09493 IRF5-214ENST00000613821 595 ntTSL 5 BASIC17.1■□□□□ 0.33
TPM1P09493 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM1P09493 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TPM1P09493 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
TPM1P09493 KCNT1-212ENST00000628528 7057 ntAPPRIS ALT2 TSL 2 BASIC17.1■□□□□ 0.33
TPM1P09493 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
TPM1P09493 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM1P09493 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM1P09493 TIGD4-201ENST00000304337 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM1P09493 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM1P09493 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC17.1■□□□□ 0.33
TPM1P09493 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC17.1■□□□□ 0.33
TPM1P09493 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC17.1■□□□□ 0.33
TPM1P09493 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM1P09493 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM1P09493 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM1P09493 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC17.1■□□□□ 0.33
TPM1P09493 RNF122-201ENST00000256257 1868 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
TPM1P09493 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC17.1■□□□□ 0.33
TPM1P09493 PCDHGA6-202ENST00000610583 5650 ntAPPRIS P1 BASIC17.1■□□□□ 0.33
TPM1P09493 BEND3P1-201ENST00000421591 1944 ntBASIC17.09■□□□□ 0.33
TPM1P09493 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM1P09493 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM1P09493 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
TPM1P09493 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM1P09493 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM1P09493 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC17.09■□□□□ 0.33
TPM1P09493 ZBED1-203ENST00000381223 4510 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
TPM1P09493 VPS9D1-201ENST00000389386 2748 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM1P09493 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC17.09■□□□□ 0.33
TPM1P09493 GNAO1-201ENST00000262493 3337 ntAPPRIS P5 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM1P09493 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TPM1P09493 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
TPM1P09493 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC17.09■□□□□ 0.33
TPM1P09493 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC17.09■□□□□ 0.33
TPM1P09493 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.09■□□□□ 0.33
TPM1P09493 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM1P09493 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC17.09■□□□□ 0.33
TPM1P09493 AC145285.3-201ENST00000564603 959 ntBASIC17.09■□□□□ 0.33
TPM1P09493 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM1P09493 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TPM1P09493 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC17.09■□□□□ 0.33
TPM1P09493 AC104692.2-201ENST00000603054 253 ntBASIC17.09■□□□□ 0.33
TPM1P09493 AC097359.3-201ENST00000603982 1210 ntBASIC17.09■□□□□ 0.33
TPM1P09493 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
TPM1P09493 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC17.09■□□□□ 0.33
TPM1P09493 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM1P09493 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM1P09493 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM1P09493 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC17.09■□□□□ 0.33
TPM1P09493 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC17.09■□□□□ 0.33
TPM1P09493 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM1P09493 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM1P09493 TAF6-205ENST00000437822 2318 ntTSL 2 BASIC17.09■□□□□ 0.33
TPM1P09493 ARNT2-204ENST00000527771 2458 ntAPPRIS ALT1 TSL 2 BASIC17.09■□□□□ 0.33
TPM1P09493 RUSC1-202ENST00000368347 2503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM1P09493 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC17.09■□□□□ 0.33
TPM1P09493 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
TPM1P09493 INTS4P1-203ENST00000641008 3683 ntBASIC17.09■□□□□ 0.33
TPM1P09493 NELFA-202ENST00000382882 3343 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
TPM1P09493 FAM163A-201ENST00000341785 2909 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
TPM1P09493 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC17.08■□□□□ 0.33
TPM1P09493 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC17.08■□□□□ 0.33
TPM1P09493 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC17.08■□□□□ 0.33
TPM1P09493 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC17.08■□□□□ 0.33
TPM1P09493 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC17.08■□□□□ 0.33
TPM1P09493 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC17.08■□□□□ 0.32
TPM1P09493 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TPM1P09493 SLIT3-206ENST00000519560 9706 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.32
TPM1P09493 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC17.08■□□□□ 0.32
TPM1P09493 CNNM2-203ENST00000433628 3857 ntAPPRIS ALT1 TSL 2 BASIC17.08■□□□□ 0.32
TPM1P09493 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC17.08■□□□□ 0.32
TPM1P09493 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TPM1P09493 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TPM1P09493 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC17.08■□□□□ 0.32
TPM1P09493 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
TPM1P09493 MRPL3P1-201ENST00000400109 1033 ntBASIC17.08■□□□□ 0.32
TPM1P09493 AL355306.1-201ENST00000415580 579 ntBASIC17.08■□□□□ 0.32
TPM1P09493 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
TPM1P09493 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TPM1P09493 KRT18P2-201ENST00000447938 1258 ntBASIC17.08■□□□□ 0.32
TPM1P09493 PQLC2L-205ENST00000461040 563 ntAPPRIS ALT2 TSL 3 BASIC17.08■□□□□ 0.32
TPM1P09493 RNA5SP419-201ENST00000515908 135 ntBASIC17.08■□□□□ 0.32
TPM1P09493 ZBP1-208ENST00000541799 1041 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
TPM1P09493 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC17.08■□□□□ 0.32
TPM1P09493 MAX-210ENST00000555419 765 ntTSL 5 BASIC17.08■□□□□ 0.32
TPM1P09493 NAA38-207ENST00000576861 556 ntTSL 3 BASIC17.08■□□□□ 0.32
TPM1P09493 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC17.08■□□□□ 0.32
TPM1P09493 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.08■□□□□ 0.32
TPM1P09493 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC17.08■□□□□ 0.32
TPM1P09493 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC17.08■□□□□ 0.32
TPM1P09493 FYN-202ENST00000354650 3628 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
TPM1P09493 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
TPM1P09493 RPS6KL1-210ENST00000555647 3309 ntAPPRIS P1 TSL 5 BASIC17.08■□□□□ 0.32
TPM1P09493 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TPM1P09493 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TPM1P09493 ERC1-219ENST00000546231 4390 ntTSL 5 BASIC17.08■□□□□ 0.32
TPM1P09493 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
TPM1P09493 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
TPM1P09493 PTPN23-201ENST00000265562 5244 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 54.8 ms