Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CL1P78423 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CL1P78423 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
CX3CL1P78423 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC12.53□□□□□ -0.4
CX3CL1P78423 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
CX3CL1P78423 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC12.53□□□□□ -0.4
CX3CL1P78423 SDHAP3-202ENST00000515467 728 ntBASIC12.53□□□□□ -0.4
CX3CL1P78423 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC12.53□□□□□ -0.4
CX3CL1P78423 AC010336.2-201ENST00000564226 506 ntBASIC12.53□□□□□ -0.4
CX3CL1P78423 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC12.53□□□□□ -0.4
CX3CL1P78423 AC025048.3-201ENST00000590609 569 ntBASIC12.53□□□□□ -0.4
CX3CL1P78423 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC12.53□□□□□ -0.4
CX3CL1P78423 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC12.53□□□□□ -0.4
CX3CL1P78423 AC005702.4-201ENST00000618393 416 ntBASIC12.53□□□□□ -0.4
CX3CL1P78423 AL390754.1-201ENST00000619088 582 ntBASIC12.53□□□□□ -0.4
CX3CL1P78423 ORC5-208ENST00000626700 344 ntTSL 3 BASIC12.53□□□□□ -0.4
CX3CL1P78423 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CL1P78423 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CL1P78423 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
CX3CL1P78423 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CL1P78423 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC12.53□□□□□ -0.4
CX3CL1P78423 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CL1P78423 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CL1P78423 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CL1P78423 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC12.53□□□□□ -0.4
CX3CL1P78423 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CL1P78423 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CL1P78423 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC12.53□□□□□ -0.4
CX3CL1P78423 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC12.53□□□□□ -0.4
CX3CL1P78423 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CL1P78423 AC020658.6-201ENST00000623564 1870 ntBASIC12.53□□□□□ -0.4
CX3CL1P78423 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CL1P78423 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC12.53□□□□□ -0.4
CX3CL1P78423 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
CX3CL1P78423 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CX3CL1P78423 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC12.52□□□□□ -0.4
CX3CL1P78423 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CX3CL1P78423 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
CX3CL1P78423 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC12.52□□□□□ -0.4
CX3CL1P78423 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
CX3CL1P78423 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.4
CX3CL1P78423 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
CX3CL1P78423 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
CX3CL1P78423 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC12.52□□□□□ -0.4
CX3CL1P78423 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CX3CL1P78423 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC12.52□□□□□ -0.4
CX3CL1P78423 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.4
CX3CL1P78423 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
CX3CL1P78423 MBD1-212ENST00000585672 2532 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
CX3CL1P78423 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.4
CX3CL1P78423 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CX3CL1P78423 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
CX3CL1P78423 AC105250.1-201ENST00000509378 2057 ntBASIC12.52□□□□□ -0.4
CX3CL1P78423 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CX3CL1P78423 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CX3CL1P78423 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
CX3CL1P78423 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
CX3CL1P78423 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
CX3CL1P78423 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC12.52□□□□□ -0.4
CX3CL1P78423 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC12.52□□□□□ -0.41
CX3CL1P78423 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC12.52□□□□□ -0.41
CX3CL1P78423 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
CX3CL1P78423 TLL1-201ENST00000061240 6708 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CL1P78423 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
CX3CL1P78423 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CL1P78423 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CL1P78423 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC12.52□□□□□ -0.41
CX3CL1P78423 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CL1P78423 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CL1P78423 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CL1P78423 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC12.52□□□□□ -0.41
CX3CL1P78423 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC12.52□□□□□ -0.41
CX3CL1P78423 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC12.52□□□□□ -0.41
CX3CL1P78423 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC12.52□□□□□ -0.41
CX3CL1P78423 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
CX3CL1P78423 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CL1P78423 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CL1P78423 MARC1-201ENST00000366910 7439 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CL1P78423 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC12.52□□□□□ -0.41
CX3CL1P78423 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CL1P78423 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CL1P78423 AC127383.1-201ENST00000444697 1800 ntBASIC12.52□□□□□ -0.41
CX3CL1P78423 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CL1P78423 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CL1P78423 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CL1P78423 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CL1P78423 MGRN1-202ENST00000399577 6425 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CL1P78423 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC12.52□□□□□ -0.41
CX3CL1P78423 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CL1P78423 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CL1P78423 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC12.52□□□□□ -0.41
CX3CL1P78423 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CL1P78423 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CL1P78423 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CL1P78423 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CL1P78423 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC12.52□□□□□ -0.41
CX3CL1P78423 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CL1P78423 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CL1P78423 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.41
CX3CL1P78423 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms