Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXA1P49639 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
HOXA1P49639 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXA1P49639 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXA1P49639 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXA1P49639 MED22-202ENST00000371999 987 ntTSL 3 BASIC12.94□□□□□ -0.34
HOXA1P49639 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC12.94□□□□□ -0.34
HOXA1P49639 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC12.94□□□□□ -0.34
HOXA1P49639 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXA1P49639 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXA1P49639 HNRNPDP1-201ENST00000439535 754 ntBASIC12.94□□□□□ -0.34
HOXA1P49639 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC12.94□□□□□ -0.34
HOXA1P49639 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXA1P49639 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC12.94□□□□□ -0.34
HOXA1P49639 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC12.94□□□□□ -0.34
HOXA1P49639 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
HOXA1P49639 USP28-214ENST00000545540 3431 ntTSL 2 BASIC12.94□□□□□ -0.34
HOXA1P49639 CHRNA3-201ENST00000326828 3202 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXA1P49639 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC12.94□□□□□ -0.34
HOXA1P49639 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC12.94□□□□□ -0.34
HOXA1P49639 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXA1P49639 LRRFIP1-204ENST00000392000 3365 ntTSL 1 (best) BASIC12.94□□□□□ -0.34
HOXA1P49639 ADAMTS13-205ENST00000371916 4330 ntTSL 5 BASIC12.94□□□□□ -0.34
HOXA1P49639 LOX-206ENST00000639739 1626 ntTSL 5 BASIC12.94□□□□□ -0.34
HOXA1P49639 PPIL2-202ENST00000398831 2574 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXA1P49639 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXA1P49639 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC12.94□□□□□ -0.34
HOXA1P49639 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXA1P49639 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC12.94□□□□□ -0.34
HOXA1P49639 TTC28-AS1-212ENST00000433317 3080 ntTSL 5 BASIC12.94□□□□□ -0.34
HOXA1P49639 LAMB2-202ENST00000418109 5674 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXA1P49639 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXA1P49639 DNASE1L1-206ENST00000393638 2665 ntAPPRIS P1 TSL 5 BASIC12.94□□□□□ -0.34
HOXA1P49639 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXA1P49639 PTPRN-201ENST00000295718 3784 ntAPPRIS P3 TSL 1 (best) BASIC12.94□□□□□ -0.34
HOXA1P49639 SRC-202ENST00000373558 4304 ntTSL 5 BASIC12.94□□□□□ -0.34
HOXA1P49639 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC12.94□□□□□ -0.34
HOXA1P49639 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC12.93□□□□□ -0.34
HOXA1P49639 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC12.93□□□□□ -0.34
HOXA1P49639 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC12.93□□□□□ -0.34
HOXA1P49639 SYN2-205ENST00000620175 3871 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HOXA1P49639 TNPO2-202ENST00000425528 5122 ntAPPRIS P4 TSL 5 BASIC12.93□□□□□ -0.34
HOXA1P49639 DENND3-211ENST00000519811 5482 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
HOXA1P49639 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC12.93□□□□□ -0.34
HOXA1P49639 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HOXA1P49639 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC12.93□□□□□ -0.34
HOXA1P49639 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HOXA1P49639 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HOXA1P49639 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HOXA1P49639 FLII-201ENST00000327031 4338 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HOXA1P49639 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HOXA1P49639 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC12.93□□□□□ -0.34
HOXA1P49639 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HOXA1P49639 DACH1-204ENST00000620444 4627 ntAPPRIS ALT2 TSL 5 BASIC12.93□□□□□ -0.34
HOXA1P49639 ZNF23-203ENST00000393539 3242 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
HOXA1P49639 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HOXA1P49639 AP001282.1-201ENST00000531301 1499 ntBASIC12.93□□□□□ -0.34
HOXA1P49639 EXOC3-201ENST00000315013 2682 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
HOXA1P49639 C3orf62-201ENST00000343010 4235 ntAPPRIS P2 TSL 1 (best) BASIC12.93□□□□□ -0.34
HOXA1P49639 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
HOXA1P49639 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC12.93□□□□□ -0.34
HOXA1P49639 PPP1CB-203ENST00000395366 4893 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HOXA1P49639 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC12.93□□□□□ -0.34
HOXA1P49639 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC12.93□□□□□ -0.34
HOXA1P49639 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC12.93□□□□□ -0.34
HOXA1P49639 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC12.93□□□□□ -0.34
HOXA1P49639 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC12.93□□□□□ -0.34
HOXA1P49639 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC12.93□□□□□ -0.34
HOXA1P49639 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC12.93□□□□□ -0.34
HOXA1P49639 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC12.93□□□□□ -0.34
HOXA1P49639 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC12.93□□□□□ -0.34
HOXA1P49639 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC12.93□□□□□ -0.34
HOXA1P49639 TCAP-202ENST00000578283 583 ntTSL 5 BASIC12.93□□□□□ -0.34
HOXA1P49639 AL121912.1-201ENST00000603683 238 ntBASIC12.93□□□□□ -0.34
HOXA1P49639 AL078644.1-201ENST00000609881 752 ntBASIC12.93□□□□□ -0.34
HOXA1P49639 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HOXA1P49639 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC12.93□□□□□ -0.34
HOXA1P49639 TTK-201ENST00000230510 3477 ntAPPRIS ALT2 TSL 2 BASIC12.93□□□□□ -0.34
HOXA1P49639 KLHL34-201ENST00000379499 3641 ntAPPRIS P1 BASIC12.93□□□□□ -0.34
HOXA1P49639 INPPL1-213ENST00000541756 4649 ntTSL 5 BASIC12.93□□□□□ -0.34
HOXA1P49639 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC12.93□□□□□ -0.34
HOXA1P49639 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC12.93□□□□□ -0.34
HOXA1P49639 MYO16-202ENST00000356711 6874 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
HOXA1P49639 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HOXA1P49639 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC12.93□□□□□ -0.34
HOXA1P49639 ZNF783-202ENST00000434415 4452 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
HOXA1P49639 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC12.93□□□□□ -0.34
HOXA1P49639 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HOXA1P49639 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC12.93□□□□□ -0.34
HOXA1P49639 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HOXA1P49639 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC12.93□□□□□ -0.34
HOXA1P49639 OS9-206ENST00000435406 2346 ntTSL 2 BASIC12.93□□□□□ -0.34
HOXA1P49639 MKLN1-203ENST00000421797 2460 ntTSL 2 BASIC12.93□□□□□ -0.34
HOXA1P49639 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC12.93□□□□□ -0.34
HOXA1P49639 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC12.92□□□□□ -0.34
HOXA1P49639 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXA1P49639 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXA1P49639 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.34
HOXA1P49639 AC090826.2-201ENST00000568496 4946 ntTSL 2 BASIC12.92□□□□□ -0.34
HOXA1P49639 JAKMIP3-201ENST00000298622 6626 ntAPPRIS P1 TSL 5 BASIC12.92□□□□□ -0.34
Retrieved 100 of 98,524 protein–RNA pairs in 81.4 ms