Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
HNF4AP41235 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
HNF4AP41235 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC15.06■□□□□ 0
HNF4AP41235 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC15.06■□□□□ 0
HNF4AP41235 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.06■□□□□ 0
HNF4AP41235 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC15.06■□□□□ 0
HNF4AP41235 TOMM22P5-201ENST00000416399 439 ntBASIC15.06■□□□□ 0
HNF4AP41235 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC15.06■□□□□ 0
HNF4AP41235 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC15.06■□□□□ 0
HNF4AP41235 AC004890.2-204ENST00000481968 304 ntBASIC15.06■□□□□ 0
HNF4AP41235 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC15.06■□□□□ 0
HNF4AP41235 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC15.06■□□□□ 0
HNF4AP41235 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC15.06■□□□□ 0
HNF4AP41235 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC15.06■□□□□ 0
HNF4AP41235 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC15.06■□□□□ 0
HNF4AP41235 RAB35-202ENST00000534951 939 ntTSL 2 BASIC15.06■□□□□ 0
HNF4AP41235 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC15.06■□□□□ 0
HNF4AP41235 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC15.06■□□□□ 0
HNF4AP41235 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC15.06■□□□□ 0
HNF4AP41235 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC15.06■□□□□ 0
HNF4AP41235 AC009407.1-201ENST00000568958 598 ntBASIC15.06■□□□□ 0
HNF4AP41235 SSH2-210ENST00000582084 560 ntTSL 3 BASIC15.06■□□□□ 0
HNF4AP41235 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC15.06■□□□□ 0
HNF4AP41235 LINC01115-203ENST00000606068 577 ntBASIC15.06■□□□□ 0
HNF4AP41235 AL355385.1-201ENST00000606123 409 ntBASIC15.06■□□□□ 0
HNF4AP41235 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HNF4AP41235 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 0
HNF4AP41235 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
HNF4AP41235 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC15.06■□□□□ 0
HNF4AP41235 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC15.06■□□□□ 0
HNF4AP41235 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
HNF4AP41235 AC022144.1-201ENST00000602255 1580 ntBASIC15.06■□□□□ 0
HNF4AP41235 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC15.06■□□□□ 0
HNF4AP41235 AMT-224ENST00000635808 1610 ntTSL 5 BASIC15.06■□□□□ 0
HNF4AP41235 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
HNF4AP41235 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC15.06■□□□□ 0
HNF4AP41235 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC15.06■□□□□ 0
HNF4AP41235 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
HNF4AP41235 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.06■□□□□ 0
HNF4AP41235 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
HNF4AP41235 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC15.05■□□□□ 0
HNF4AP41235 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC15.05■□□□□ 0
HNF4AP41235 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
HNF4AP41235 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC15.05■□□□□ 0
HNF4AP41235 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC15.05■□□□□ 0
HNF4AP41235 LONP1-213ENST00000590729 2626 ntTSL 1 (best) BASIC15.05■□□□□ 0
HNF4AP41235 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC15.05■□□□□ 0
HNF4AP41235 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
HNF4AP41235 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HNF4AP41235 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
HNF4AP41235 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC15.05■□□□□ -0
HNF4AP41235 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HNF4AP41235 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC15.05■□□□□ -0
HNF4AP41235 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC15.05■□□□□ -0
HNF4AP41235 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC15.05■□□□□ -0
HNF4AP41235 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC15.05■□□□□ -0
HNF4AP41235 FAM8A3P-201ENST00000427218 844 ntBASIC15.05■□□□□ -0
HNF4AP41235 KRT18P64-201ENST00000434946 1219 ntBASIC15.05■□□□□ -0
HNF4AP41235 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC15.05■□□□□ -0
HNF4AP41235 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC15.05■□□□□ -0
HNF4AP41235 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
HNF4AP41235 RNA5SP421-201ENST00000516864 134 ntBASIC15.05■□□□□ -0
HNF4AP41235 NAA60-208ENST00000570819 833 ntTSL 2 BASIC15.05■□□□□ -0
HNF4AP41235 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HNF4AP41235 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC15.05■□□□□ -0
HNF4AP41235 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC15.05■□□□□ -0
HNF4AP41235 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HNF4AP41235 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HNF4AP41235 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HNF4AP41235 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC15.05■□□□□ -0
HNF4AP41235 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
HNF4AP41235 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC15.05■□□□□ -0
HNF4AP41235 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC15.05■□□□□ -0
HNF4AP41235 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
HNF4AP41235 PARN-202ENST00000420015 2360 ntTSL 2 BASIC15.05■□□□□ -0
HNF4AP41235 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HNF4AP41235 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC15.05■□□□□ -0
HNF4AP41235 FOXI2-201ENST00000388920 3217 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
HNF4AP41235 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HNF4AP41235 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HNF4AP41235 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC15.04■□□□□ -0
HNF4AP41235 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HNF4AP41235 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC15.04■□□□□ -0
HNF4AP41235 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC15.04■□□□□ -0
HNF4AP41235 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC15.04■□□□□ -0
HNF4AP41235 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HNF4AP41235 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
HNF4AP41235 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC15.04■□□□□ -0
HNF4AP41235 AC023024.2-201ENST00000623561 1993 ntBASIC15.04■□□□□ -0
HNF4AP41235 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
HNF4AP41235 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HNF4AP41235 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
HNF4AP41235 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
HNF4AP41235 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC15.04■□□□□ -0
HNF4AP41235 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC15.04■□□□□ -0
HNF4AP41235 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HNF4AP41235 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
HNF4AP41235 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HNF4AP41235 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HNF4AP41235 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms