Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL8A1P27658 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
COL8A1P27658 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL8A1P27658 PPP1CA-201ENST00000312989 1389 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL8A1P27658 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL8A1P27658 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL8A1P27658 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC13.49□□□□□ -0.25
COL8A1P27658 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC13.49□□□□□ -0.25
COL8A1P27658 CENPBD1P1-204ENST00000487264 1308 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL8A1P27658 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL8A1P27658 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL8A1P27658 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL8A1P27658 SYCN-201ENST00000318438 573 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL8A1P27658 C1orf43-205ENST00000368519 1163 ntTSL 2 BASIC13.49□□□□□ -0.25
COL8A1P27658 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL8A1P27658 AC233976.1-201ENST00000425150 451 ntTSL 3 BASIC13.49□□□□□ -0.25
COL8A1P27658 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC13.49□□□□□ -0.25
COL8A1P27658 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC13.49□□□□□ -0.25
COL8A1P27658 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC13.49□□□□□ -0.25
COL8A1P27658 PPOX-204ENST00000462866 473 ntTSL 5 BASIC13.49□□□□□ -0.25
COL8A1P27658 RN7SL181P-201ENST00000462921 277 ntBASIC13.49□□□□□ -0.25
COL8A1P27658 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC13.49□□□□□ -0.25
COL8A1P27658 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC13.49□□□□□ -0.25
COL8A1P27658 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC13.49□□□□□ -0.25
COL8A1P27658 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC13.49□□□□□ -0.25
COL8A1P27658 AC015660.1-201ENST00000560103 395 ntTSL 3 BASIC13.49□□□□□ -0.25
COL8A1P27658 AP001065.2-201ENST00000617205 644 ntBASIC13.49□□□□□ -0.25
COL8A1P27658 AC148477.9-201ENST00000623974 539 ntBASIC13.49□□□□□ -0.25
COL8A1P27658 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC13.49□□□□□ -0.25
COL8A1P27658 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
COL8A1P27658 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL8A1P27658 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL8A1P27658 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC13.49□□□□□ -0.25
COL8A1P27658 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC13.49□□□□□ -0.25
COL8A1P27658 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL8A1P27658 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL8A1P27658 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC13.49□□□□□ -0.25
COL8A1P27658 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL8A1P27658 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL8A1P27658 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC13.49□□□□□ -0.25
COL8A1P27658 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC13.49□□□□□ -0.25
COL8A1P27658 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC13.49□□□□□ -0.25
COL8A1P27658 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL8A1P27658 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC13.49□□□□□ -0.25
COL8A1P27658 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL8A1P27658 AL139384.1-201ENST00000612143 3047 ntBASIC13.48□□□□□ -0.25
COL8A1P27658 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
COL8A1P27658 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL8A1P27658 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC13.48□□□□□ -0.25
COL8A1P27658 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL8A1P27658 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL8A1P27658 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL8A1P27658 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL8A1P27658 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL8A1P27658 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL8A1P27658 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL8A1P27658 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL8A1P27658 ATP5H-201ENST00000301587 603 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL8A1P27658 PSMB5-202ENST00000361611 1294 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL8A1P27658 GATD1-203ENST00000397472 790 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL8A1P27658 SERF2-206ENST00000409291 807 ntTSL 3 BASIC13.48□□□□□ -0.25
COL8A1P27658 AL008707.1-201ENST00000422498 534 ntBASIC13.48□□□□□ -0.25
COL8A1P27658 KRT18P43-201ENST00000469825 1281 ntBASIC13.48□□□□□ -0.25
COL8A1P27658 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC13.48□□□□□ -0.25
COL8A1P27658 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL8A1P27658 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC13.48□□□□□ -0.25
COL8A1P27658 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC13.48□□□□□ -0.25
COL8A1P27658 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC13.48□□□□□ -0.25
COL8A1P27658 CENPX-208ENST00000584347 799 ntTSL 2 BASIC13.48□□□□□ -0.25
COL8A1P27658 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC13.48□□□□□ -0.25
COL8A1P27658 KLK11-210ENST00000600362 759 ntTSL 3 BASIC13.48□□□□□ -0.25
COL8A1P27658 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL8A1P27658 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC13.48□□□□□ -0.25
COL8A1P27658 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC13.48□□□□□ -0.25
COL8A1P27658 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL8A1P27658 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
COL8A1P27658 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL8A1P27658 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC13.48□□□□□ -0.25
COL8A1P27658 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC13.48□□□□□ -0.25
COL8A1P27658 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC13.48□□□□□ -0.25
COL8A1P27658 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC13.48□□□□□ -0.25
COL8A1P27658 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC13.48□□□□□ -0.25
COL8A1P27658 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC13.48□□□□□ -0.25
COL8A1P27658 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL8A1P27658 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL8A1P27658 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL8A1P27658 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC13.48□□□□□ -0.25
COL8A1P27658 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL8A1P27658 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC13.48□□□□□ -0.25
COL8A1P27658 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL8A1P27658 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
COL8A1P27658 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL8A1P27658 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
COL8A1P27658 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL8A1P27658 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
COL8A1P27658 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC13.48□□□□□ -0.25
COL8A1P27658 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC13.47□□□□□ -0.25
COL8A1P27658 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
COL8A1P27658 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
COL8A1P27658 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms