Protein–RNA interactions for Protein: O95985

TOP3B, DNA topoisomerase 3-beta-1, humanhuman

Known RBP Predictions only

Length 862 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3BO95985 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
TOP3BO95985 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TOP3BO95985 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
TOP3BO95985 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC15.91■□□□□ 0.14
TOP3BO95985 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC15.91■□□□□ 0.14
TOP3BO95985 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.91■□□□□ 0.14
TOP3BO95985 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
TOP3BO95985 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TOP3BO95985 POLR2I-201ENST00000221859 913 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TOP3BO95985 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TOP3BO95985 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TOP3BO95985 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TOP3BO95985 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TOP3BO95985 AL353705.2-201ENST00000428243 662 ntBASIC15.91■□□□□ 0.14
TOP3BO95985 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC15.91■□□□□ 0.14
TOP3BO95985 MYCLP2-201ENST00000449268 967 ntBASIC15.91■□□□□ 0.14
TOP3BO95985 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC15.91■□□□□ 0.14
TOP3BO95985 ELK1P1-201ENST00000485699 580 ntBASIC15.91■□□□□ 0.14
TOP3BO95985 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC15.91■□□□□ 0.14
TOP3BO95985 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
TOP3BO95985 IGHV3OR16-16-201ENST00000563644 343 ntBASIC15.91■□□□□ 0.14
TOP3BO95985 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TOP3BO95985 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TOP3BO95985 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TOP3BO95985 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TOP3BO95985 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TOP3BO95985 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC15.91■□□□□ 0.14
TOP3BO95985 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TOP3BO95985 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC15.91■□□□□ 0.14
TOP3BO95985 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC15.91■□□□□ 0.14
TOP3BO95985 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TOP3BO95985 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC15.91■□□□□ 0.14
TOP3BO95985 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TOP3BO95985 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TOP3BO95985 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
TOP3BO95985 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TOP3BO95985 PLXNC1-201ENST00000258526 7346 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TOP3BO95985 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TOP3BO95985 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
TOP3BO95985 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TOP3BO95985 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TOP3BO95985 TRAF6-201ENST00000348124 2558 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TOP3BO95985 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TOP3BO95985 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
TOP3BO95985 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC15.9■□□□□ 0.14
TOP3BO95985 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
TOP3BO95985 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TOP3BO95985 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TOP3BO95985 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TOP3BO95985 FLJ16779-201ENST00000612722 7638 ntBASIC15.9■□□□□ 0.14
TOP3BO95985 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TOP3BO95985 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TOP3BO95985 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TOP3BO95985 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TOP3BO95985 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC15.9■□□□□ 0.14
TOP3BO95985 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TOP3BO95985 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
TOP3BO95985 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.9■□□□□ 0.14
TOP3BO95985 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
TOP3BO95985 SLC4A9-203ENST00000506545 2838 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TOP3BO95985 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
TOP3BO95985 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC15.9■□□□□ 0.14
TOP3BO95985 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
TOP3BO95985 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TOP3BO95985 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC15.9■□□□□ 0.14
TOP3BO95985 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TOP3BO95985 AL080243.2-201ENST00000418783 582 ntBASIC15.9■□□□□ 0.14
TOP3BO95985 AC098850.1-201ENST00000419919 790 ntBASIC15.9■□□□□ 0.14
TOP3BO95985 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC15.9■□□□□ 0.14
TOP3BO95985 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC15.9■□□□□ 0.14
TOP3BO95985 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TOP3BO95985 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC15.9■□□□□ 0.14
TOP3BO95985 AC106772.2-201ENST00000515085 442 ntTSL 3 BASIC15.9■□□□□ 0.14
TOP3BO95985 AC104989.1-201ENST00000519711 778 ntBASIC15.9■□□□□ 0.14
TOP3BO95985 RAB35-202ENST00000534951 939 ntTSL 2 BASIC15.9■□□□□ 0.14
TOP3BO95985 GSTZ1-219ENST00000557639 873 ntTSL 2 BASIC15.9■□□□□ 0.14
TOP3BO95985 AC073389.1-201ENST00000595595 795 ntBASIC15.9■□□□□ 0.14
TOP3BO95985 AC244093.1-201ENST00000610837 814 ntBASIC15.9■□□□□ 0.14
TOP3BO95985 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC15.9■□□□□ 0.14
TOP3BO95985 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.9■□□□□ 0.14
TOP3BO95985 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC15.9■□□□□ 0.14
TOP3BO95985 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.9■□□□□ 0.14
TOP3BO95985 TPBG-201ENST00000369750 6484 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
TOP3BO95985 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
TOP3BO95985 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
TOP3BO95985 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC15.9■□□□□ 0.14
TOP3BO95985 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC15.9■□□□□ 0.14
TOP3BO95985 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TOP3BO95985 BTBD7P1-201ENST00000447253 1453 ntBASIC15.9■□□□□ 0.14
TOP3BO95985 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
TOP3BO95985 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TOP3BO95985 IL12RB2-206ENST00000544434 3782 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TOP3BO95985 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
TOP3BO95985 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.89■□□□□ 0.13
TOP3BO95985 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
TOP3BO95985 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TOP3BO95985 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC15.89■□□□□ 0.13
TOP3BO95985 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
TOP3BO95985 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
TOP3BO95985 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 66.9 ms