Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 AL136317.3-201ENST00000618497 906 ntBASIC17.7■□□□□ 0.42
USP28Q96RU2 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USP28Q96RU2 SALL3-205ENST00000575389 3996 ntTSL 5 BASIC17.7■□□□□ 0.42
USP28Q96RU2 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USP28Q96RU2 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC17.7■□□□□ 0.42
USP28Q96RU2 FARS2-202ENST00000324331 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
USP28Q96RU2 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC17.7■□□□□ 0.42
USP28Q96RU2 ANKRD46-205ENST00000520311 3270 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
USP28Q96RU2 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP28Q96RU2 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
USP28Q96RU2 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
USP28Q96RU2 RASGEF1A-204ENST00000395810 3235 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP28Q96RU2 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP28Q96RU2 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP28Q96RU2 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
USP28Q96RU2 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
USP28Q96RU2 CNST-203ENST00000366513 5126 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP28Q96RU2 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP28Q96RU2 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
USP28Q96RU2 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC17.69■□□□□ 0.42
USP28Q96RU2 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC17.69■□□□□ 0.42
USP28Q96RU2 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC17.69■□□□□ 0.42
USP28Q96RU2 KLF2P3-201ENST00000451977 1087 ntBASIC17.69■□□□□ 0.42
USP28Q96RU2 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC17.69■□□□□ 0.42
USP28Q96RU2 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP28Q96RU2 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
USP28Q96RU2 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC17.69■□□□□ 0.42
USP28Q96RU2 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC17.69■□□□□ 0.42
USP28Q96RU2 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC17.69■□□□□ 0.42
USP28Q96RU2 SERF2-217ENST00000630046 862 ntTSL 5 BASIC17.69■□□□□ 0.42
USP28Q96RU2 SEPT9-208ENST00000541152 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP28Q96RU2 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
USP28Q96RU2 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
USP28Q96RU2 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP28Q96RU2 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP28Q96RU2 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
USP28Q96RU2 TTLL13P-202ENST00000438251 2738 ntAPPRIS P5 TSL 5 BASIC17.69■□□□□ 0.42
USP28Q96RU2 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP28Q96RU2 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
USP28Q96RU2 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC17.68■□□□□ 0.42
USP28Q96RU2 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
USP28Q96RU2 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP28Q96RU2 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC17.68■□□□□ 0.42
USP28Q96RU2 AC139749.1-202ENST00000617529 3139 ntBASIC17.68■□□□□ 0.42
USP28Q96RU2 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP28Q96RU2 SPATA7-203ENST00000393545 2123 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP28Q96RU2 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
USP28Q96RU2 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP28Q96RU2 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP28Q96RU2 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
USP28Q96RU2 F8-201ENST00000330287 2620 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
USP28Q96RU2 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
USP28Q96RU2 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
USP28Q96RU2 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP28Q96RU2 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC17.68■□□□□ 0.42
USP28Q96RU2 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
USP28Q96RU2 KRT18P13-201ENST00000400056 1290 ntBASIC17.68■□□□□ 0.42
USP28Q96RU2 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC17.68■□□□□ 0.42
USP28Q96RU2 ZNF219-203ENST00000451119 2918 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
USP28Q96RU2 SDHAP3-202ENST00000515467 728 ntBASIC17.68■□□□□ 0.42
USP28Q96RU2 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC17.68■□□□□ 0.42
USP28Q96RU2 AC069120.2-201ENST00000524091 540 ntBASIC17.68■□□□□ 0.42
USP28Q96RU2 AC027369.6-201ENST00000525520 931 ntBASIC17.68■□□□□ 0.42
USP28Q96RU2 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
USP28Q96RU2 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC17.68■□□□□ 0.42
USP28Q96RU2 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC17.68■□□□□ 0.42
USP28Q96RU2 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC17.68■□□□□ 0.42
USP28Q96RU2 CYB561-219ENST00000584031 3200 ntTSL 2 BASIC17.68■□□□□ 0.42
USP28Q96RU2 AC015911.4-201ENST00000588022 1070 ntBASIC17.68■□□□□ 0.42
USP28Q96RU2 PXN-221ENST00000637617 3246 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
USP28Q96RU2 AL645728.2-202ENST00000641679 227 ntBASIC17.68■□□□□ 0.42
USP28Q96RU2 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
USP28Q96RU2 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC17.68■□□□□ 0.42
USP28Q96RU2 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP28Q96RU2 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
USP28Q96RU2 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP28Q96RU2 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP28Q96RU2 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
USP28Q96RU2 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC17.68■□□□□ 0.42
USP28Q96RU2 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
USP28Q96RU2 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
USP28Q96RU2 OR2V1-205ENST00000642036 2609 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
USP28Q96RU2 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USP28Q96RU2 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC17.67■□□□□ 0.42
USP28Q96RU2 GOLGA8DP-202ENST00000341390 2184 ntBASIC17.67■□□□□ 0.42
USP28Q96RU2 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USP28Q96RU2 KCNT1-211ENST00000491806 3678 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
USP28Q96RU2 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP28Q96RU2 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP28Q96RU2 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP28Q96RU2 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP28Q96RU2 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC17.67■□□□□ 0.42
USP28Q96RU2 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USP28Q96RU2 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
USP28Q96RU2 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USP28Q96RU2 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
USP28Q96RU2 BAD-202ENST00000394531 631 ntTSL 3 BASIC17.67■□□□□ 0.42
USP28Q96RU2 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USP28Q96RU2 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
USP28Q96RU2 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 96.8 ms