Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC13.77□□□□□ -0.21
SKA3Q8IX90 UGT1A2P-201ENST00000454886 866 ntBASIC13.77□□□□□ -0.21
SKA3Q8IX90 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC13.77□□□□□ -0.21
SKA3Q8IX90 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SKA3Q8IX90 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SKA3Q8IX90 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC13.77□□□□□ -0.21
SKA3Q8IX90 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC13.77□□□□□ -0.21
SKA3Q8IX90 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.21
SKA3Q8IX90 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC13.77□□□□□ -0.21
SKA3Q8IX90 AL355385.1-201ENST00000606123 409 ntBASIC13.77□□□□□ -0.21
SKA3Q8IX90 5S_rRNA.22-201ENST00000614916 106 ntBASIC13.77□□□□□ -0.21
SKA3Q8IX90 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC13.77□□□□□ -0.21
SKA3Q8IX90 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
SKA3Q8IX90 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC13.77□□□□□ -0.21
SKA3Q8IX90 TET2-207ENST00000513237 10166 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
SKA3Q8IX90 TET2-209ENST00000540549 10166 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
SKA3Q8IX90 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC13.77□□□□□ -0.21
SKA3Q8IX90 TJP2-212ENST00000636438 4689 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
SKA3Q8IX90 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SKA3Q8IX90 FHDC1-202ENST00000511601 6583 ntAPPRIS P1 TSL 5 BASIC13.77□□□□□ -0.21
SKA3Q8IX90 SNX18-202ENST00000343017 3140 ntBASIC13.77□□□□□ -0.21
SKA3Q8IX90 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
SKA3Q8IX90 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC13.77□□□□□ -0.21
SKA3Q8IX90 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
SKA3Q8IX90 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC13.76□□□□□ -0.21
SKA3Q8IX90 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC13.76□□□□□ -0.21
SKA3Q8IX90 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SKA3Q8IX90 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC13.76□□□□□ -0.21
SKA3Q8IX90 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC13.76□□□□□ -0.21
SKA3Q8IX90 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
SKA3Q8IX90 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
SKA3Q8IX90 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC13.76□□□□□ -0.21
SKA3Q8IX90 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SKA3Q8IX90 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SKA3Q8IX90 FAM214B-202ENST00000378557 3070 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SKA3Q8IX90 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
SKA3Q8IX90 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SKA3Q8IX90 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SKA3Q8IX90 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC13.76□□□□□ -0.21
SKA3Q8IX90 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
SKA3Q8IX90 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SKA3Q8IX90 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC13.76□□□□□ -0.21
SKA3Q8IX90 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC13.76□□□□□ -0.21
SKA3Q8IX90 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC13.76□□□□□ -0.21
SKA3Q8IX90 KANK2-201ENST00000586659 5162 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
SKA3Q8IX90 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
SKA3Q8IX90 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SKA3Q8IX90 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SKA3Q8IX90 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
SKA3Q8IX90 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC13.76□□□□□ -0.21
SKA3Q8IX90 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SKA3Q8IX90 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
SKA3Q8IX90 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC13.76□□□□□ -0.21
SKA3Q8IX90 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC13.76□□□□□ -0.21
SKA3Q8IX90 SPDYE18-201ENST00000510091 1050 ntBASIC13.76□□□□□ -0.21
SKA3Q8IX90 TIMM17BP1-201ENST00000545713 516 ntBASIC13.76□□□□□ -0.21
SKA3Q8IX90 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
SKA3Q8IX90 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
SKA3Q8IX90 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC13.76□□□□□ -0.21
SKA3Q8IX90 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC13.76□□□□□ -0.21
SKA3Q8IX90 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC13.76□□□□□ -0.21
SKA3Q8IX90 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SKA3Q8IX90 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SKA3Q8IX90 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC13.76□□□□□ -0.21
SKA3Q8IX90 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
SKA3Q8IX90 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SKA3Q8IX90 AC067930.6-201ENST00000623257 4947 ntBASIC13.76□□□□□ -0.21
SKA3Q8IX90 NYNRIN-201ENST00000382554 7857 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
SKA3Q8IX90 ZKSCAN2-201ENST00000328086 7523 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SKA3Q8IX90 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC13.76□□□□□ -0.21
SKA3Q8IX90 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC13.76□□□□□ -0.21
SKA3Q8IX90 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SKA3Q8IX90 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
SKA3Q8IX90 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC13.75□□□□□ -0.21
SKA3Q8IX90 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC13.75□□□□□ -0.21
SKA3Q8IX90 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SKA3Q8IX90 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SKA3Q8IX90 AL359258.3-201ENST00000622910 2331 ntBASIC13.75□□□□□ -0.21
SKA3Q8IX90 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
SKA3Q8IX90 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
SKA3Q8IX90 DEK-201ENST00000244776 1441 ntTSL 2 BASIC13.75□□□□□ -0.21
SKA3Q8IX90 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SKA3Q8IX90 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
SKA3Q8IX90 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC13.75□□□□□ -0.21
SKA3Q8IX90 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
SKA3Q8IX90 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
SKA3Q8IX90 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
SKA3Q8IX90 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC13.75□□□□□ -0.21
SKA3Q8IX90 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
SKA3Q8IX90 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
SKA3Q8IX90 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC13.75□□□□□ -0.21
SKA3Q8IX90 TOMM22P5-201ENST00000416399 439 ntBASIC13.75□□□□□ -0.21
SKA3Q8IX90 RASL12-203ENST00000434605 982 ntTSL 2 BASIC13.75□□□□□ -0.21
SKA3Q8IX90 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC13.75□□□□□ -0.21
SKA3Q8IX90 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC13.75□□□□□ -0.21
SKA3Q8IX90 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC13.75□□□□□ -0.21
SKA3Q8IX90 REEP4-207ENST00000523293 913 ntTSL 3 BASIC13.75□□□□□ -0.21
SKA3Q8IX90 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
SKA3Q8IX90 SRD5A3P1-201ENST00000603021 949 ntBASIC13.75□□□□□ -0.21
SKA3Q8IX90 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms