Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC13.92□□□□□ -0.18
SCN1BQ07699 GNAO1-202ENST00000262494 5767 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SCN1BQ07699 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SCN1BQ07699 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC13.92□□□□□ -0.18
SCN1BQ07699 KIAA1257-204ENST00000511438 2408 ntAPPRIS ALT2 TSL 2 BASIC13.92□□□□□ -0.18
SCN1BQ07699 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SCN1BQ07699 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC13.92□□□□□ -0.18
SCN1BQ07699 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SCN1BQ07699 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SCN1BQ07699 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SCN1BQ07699 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SCN1BQ07699 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SCN1BQ07699 FBXO21-202ENST00000427718 4138 ntTSL 1 (best) BASIC13.92□□□□□ -0.18
SCN1BQ07699 TBC1D22A-201ENST00000337137 3787 ntAPPRIS P1 TSL 1 (best) BASIC13.92□□□□□ -0.18
SCN1BQ07699 UGT3A2-201ENST00000282507 2355 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SCN1BQ07699 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC13.91□□□□□ -0.18
SCN1BQ07699 GORASP2-201ENST00000234160 3173 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SCN1BQ07699 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC13.91□□□□□ -0.18
SCN1BQ07699 SGK2-201ENST00000341458 2498 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SCN1BQ07699 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC13.91□□□□□ -0.18
SCN1BQ07699 LRRC41-201ENST00000343304 2947 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SCN1BQ07699 ZC3H4-201ENST00000253048 6119 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
SCN1BQ07699 DFNA5-201ENST00000342947 2590 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SCN1BQ07699 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SCN1BQ07699 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SCN1BQ07699 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC13.91□□□□□ -0.18
SCN1BQ07699 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC13.91□□□□□ -0.18
SCN1BQ07699 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SCN1BQ07699 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SCN1BQ07699 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SCN1BQ07699 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC13.91□□□□□ -0.18
SCN1BQ07699 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC13.91□□□□□ -0.18
SCN1BQ07699 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SCN1BQ07699 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SCN1BQ07699 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SCN1BQ07699 GPRASP1-203ENST00000444152 5809 ntAPPRIS P1 TSL 3 BASIC13.91□□□□□ -0.18
SCN1BQ07699 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SCN1BQ07699 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SCN1BQ07699 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
SCN1BQ07699 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
SCN1BQ07699 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SCN1BQ07699 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC13.91□□□□□ -0.18
SCN1BQ07699 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC13.91□□□□□ -0.18
SCN1BQ07699 AC009947.1-201ENST00000444350 727 ntBASIC13.91□□□□□ -0.18
SCN1BQ07699 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC13.91□□□□□ -0.18
SCN1BQ07699 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC13.91□□□□□ -0.18
SCN1BQ07699 POLD4-207ENST00000531239 584 ntTSL 2 BASIC13.91□□□□□ -0.18
SCN1BQ07699 AL031432.2-201ENST00000566714 459 ntBASIC13.91□□□□□ -0.18
SCN1BQ07699 AL928711.1-201ENST00000570165 459 ntBASIC13.91□□□□□ -0.18
SCN1BQ07699 AL031055.1-201ENST00000606362 631 ntBASIC13.91□□□□□ -0.18
SCN1BQ07699 LINC00476-204ENST00000429781 2825 ntTSL 2 BASIC13.91□□□□□ -0.18
SCN1BQ07699 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SCN1BQ07699 CAMK2D-204ENST00000394522 2696 ntAPPRIS ALT1 TSL 1 (best) BASIC13.91□□□□□ -0.18
SCN1BQ07699 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC13.91□□□□□ -0.18
SCN1BQ07699 PROSER3-202ENST00000396908 2149 ntAPPRIS P5 TSL 1 (best) BASIC13.91□□□□□ -0.18
SCN1BQ07699 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC13.91□□□□□ -0.18
SCN1BQ07699 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
SCN1BQ07699 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
SCN1BQ07699 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC13.91□□□□□ -0.18
SCN1BQ07699 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC13.91□□□□□ -0.18
SCN1BQ07699 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC13.91□□□□□ -0.18
SCN1BQ07699 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC13.91□□□□□ -0.18
SCN1BQ07699 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC13.91□□□□□ -0.18
SCN1BQ07699 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC13.91□□□□□ -0.18
SCN1BQ07699 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SCN1BQ07699 NARFL-202ENST00000540986 3212 ntTSL 2 BASIC13.9□□□□□ -0.18
SCN1BQ07699 ADRB2-201ENST00000305988 3443 ntAPPRIS P1 BASIC13.9□□□□□ -0.18
SCN1BQ07699 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SCN1BQ07699 OPA1-205ENST00000361908 6439 ntAPPRIS P3 TSL 1 (best) BASIC13.9□□□□□ -0.18
SCN1BQ07699 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SCN1BQ07699 MBD1-201ENST00000269468 3259 ntAPPRIS P3 TSL 5 BASIC13.9□□□□□ -0.18
SCN1BQ07699 PRDM10-204ENST00000423662 5998 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SCN1BQ07699 DUSP28-202ENST00000405954 3461 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SCN1BQ07699 SYNPO2L-202ENST00000394810 4921 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SCN1BQ07699 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC13.9□□□□□ -0.18
SCN1BQ07699 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
SCN1BQ07699 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC13.9□□□□□ -0.18
SCN1BQ07699 TOM1L2-202ENST00000379504 2418 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
SCN1BQ07699 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC13.9□□□□□ -0.18
SCN1BQ07699 EPHB4-210ENST00000616502 3737 ntTSL 5 BASIC13.9□□□□□ -0.18
SCN1BQ07699 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SCN1BQ07699 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SCN1BQ07699 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SCN1BQ07699 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC13.9□□□□□ -0.18
SCN1BQ07699 CD99-202ENST00000381180 530 ntTSL 2 BASIC13.9□□□□□ -0.18
SCN1BQ07699 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC13.9□□□□□ -0.18
SCN1BQ07699 PPIE-208ENST00000470213 927 ntTSL 3 BASIC13.9□□□□□ -0.18
SCN1BQ07699 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC13.9□□□□□ -0.18
SCN1BQ07699 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC13.9□□□□□ -0.18
SCN1BQ07699 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC13.9□□□□□ -0.18
SCN1BQ07699 AL662844.1-201ENST00000546340 181 ntBASIC13.9□□□□□ -0.18
SCN1BQ07699 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC13.9□□□□□ -0.18
SCN1BQ07699 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SCN1BQ07699 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
SCN1BQ07699 AC021097.1-201ENST00000607902 574 ntBASIC13.9□□□□□ -0.18
SCN1BQ07699 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC13.9□□□□□ -0.18
SCN1BQ07699 AL645728.2-201ENST00000641974 660 ntBASIC13.9□□□□□ -0.18
SCN1BQ07699 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC13.9□□□□□ -0.18
SCN1BQ07699 RIMS1-214ENST00000518273 4116 ntTSL 5 BASIC13.9□□□□□ -0.18
SCN1BQ07699 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC13.9□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 67 ms