Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
H3F3AP84243 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
H3F3AP84243 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
H3F3AP84243 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
H3F3AP84243 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
H3F3AP84243 AC104457.1-201ENST00000401024 814 ntBASIC13.87□□□□□ -0.19
H3F3AP84243 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC13.87□□□□□ -0.19
H3F3AP84243 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC13.87□□□□□ -0.19
H3F3AP84243 PFN2-205ENST00000461868 613 ntTSL 2 BASIC13.87□□□□□ -0.19
H3F3AP84243 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC13.87□□□□□ -0.19
H3F3AP84243 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC13.87□□□□□ -0.19
H3F3AP84243 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC13.87□□□□□ -0.19
H3F3AP84243 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC13.87□□□□□ -0.19
H3F3AP84243 CDK4-206ENST00000549606 558 ntTSL 2 BASIC13.87□□□□□ -0.19
H3F3AP84243 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC13.87□□□□□ -0.19
H3F3AP84243 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC13.87□□□□□ -0.19
H3F3AP84243 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC13.87□□□□□ -0.19
H3F3AP84243 TMEM261P1-201ENST00000604899 340 ntBASIC13.87□□□□□ -0.19
H3F3AP84243 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC13.87□□□□□ -0.19
H3F3AP84243 GPR39-203ENST00000622084 900 ntTSL 5 BASIC13.87□□□□□ -0.19
H3F3AP84243 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC13.87□□□□□ -0.19
H3F3AP84243 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC13.87□□□□□ -0.19
H3F3AP84243 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
H3F3AP84243 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
H3F3AP84243 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
H3F3AP84243 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
H3F3AP84243 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC13.87□□□□□ -0.19
H3F3AP84243 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
H3F3AP84243 PGR-210ENST00000619228 3038 ntTSL 5 BASIC13.87□□□□□ -0.19
H3F3AP84243 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
H3F3AP84243 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC13.87□□□□□ -0.19
H3F3AP84243 MBP-202ENST00000355994 2772 ntTSL 5 BASIC13.87□□□□□ -0.19
H3F3AP84243 AL109954.1-202ENST00000564051 2148 ntBASIC13.87□□□□□ -0.19
H3F3AP84243 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC13.87□□□□□ -0.19
H3F3AP84243 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC13.87□□□□□ -0.19
H3F3AP84243 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC13.87□□□□□ -0.19
H3F3AP84243 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC13.87□□□□□ -0.19
H3F3AP84243 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
H3F3AP84243 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
H3F3AP84243 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC13.86□□□□□ -0.19
H3F3AP84243 ZNF143-213ENST00000530463 2022 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
H3F3AP84243 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
H3F3AP84243 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
H3F3AP84243 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
H3F3AP84243 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC13.86□□□□□ -0.19
H3F3AP84243 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
H3F3AP84243 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
H3F3AP84243 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
H3F3AP84243 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC13.86□□□□□ -0.19
H3F3AP84243 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
H3F3AP84243 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC13.86□□□□□ -0.19
H3F3AP84243 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
H3F3AP84243 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
H3F3AP84243 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
H3F3AP84243 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
H3F3AP84243 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC13.86□□□□□ -0.19
H3F3AP84243 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
H3F3AP84243 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC13.86□□□□□ -0.19
H3F3AP84243 RPL13AP25-201ENST00000484130 612 ntBASIC13.86□□□□□ -0.19
H3F3AP84243 AC026410.3-201ENST00000514280 936 ntBASIC13.86□□□□□ -0.19
H3F3AP84243 POLD4-211ENST00000539074 714 ntTSL 3 BASIC13.86□□□□□ -0.19
H3F3AP84243 AC190387.1-201ENST00000551683 408 ntBASIC13.86□□□□□ -0.19
H3F3AP84243 COQ6-210ENST00000554920 649 ntTSL 3 BASIC13.86□□□□□ -0.19
H3F3AP84243 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC13.86□□□□□ -0.19
H3F3AP84243 SPDYE22P-201ENST00000582158 798 ntBASIC13.86□□□□□ -0.19
H3F3AP84243 MIR3197-201ENST00000582241 73 ntBASIC13.86□□□□□ -0.19
H3F3AP84243 AC138761.1-201ENST00000584393 385 ntBASIC13.86□□□□□ -0.19
H3F3AP84243 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC13.86□□□□□ -0.19
H3F3AP84243 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC13.86□□□□□ -0.19
H3F3AP84243 DRD5P1-201ENST00000456605 1438 ntBASIC13.86□□□□□ -0.19
H3F3AP84243 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
H3F3AP84243 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC13.86□□□□□ -0.19
H3F3AP84243 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC13.86□□□□□ -0.19
H3F3AP84243 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
H3F3AP84243 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
H3F3AP84243 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
H3F3AP84243 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
H3F3AP84243 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC13.86□□□□□ -0.19
H3F3AP84243 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
H3F3AP84243 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
H3F3AP84243 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
H3F3AP84243 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
H3F3AP84243 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC13.86□□□□□ -0.19
H3F3AP84243 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
H3F3AP84243 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
H3F3AP84243 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
H3F3AP84243 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC13.86□□□□□ -0.19
H3F3AP84243 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
H3F3AP84243 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
H3F3AP84243 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
H3F3AP84243 TMPRSS4-201ENST00000437212 2074 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
H3F3AP84243 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
H3F3AP84243 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
H3F3AP84243 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC13.86□□□□□ -0.19
H3F3AP84243 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
H3F3AP84243 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
H3F3AP84243 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
H3F3AP84243 AMT-232ENST00000636199 1546 ntTSL 5 BASIC13.85□□□□□ -0.19
H3F3AP84243 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
H3F3AP84243 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms