Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 OR2T27-203ENST00000641652 1285 ntAPPRIS P1 BASIC14.72□□□□□ -0.05
LIM2P55344 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
LIM2P55344 TPCN1-201ENST00000335509 5274 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LIM2P55344 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LIM2P55344 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
LIM2P55344 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
LIM2P55344 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC14.72□□□□□ -0.05
LIM2P55344 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LIM2P55344 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LIM2P55344 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
LIM2P55344 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
LIM2P55344 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC14.72□□□□□ -0.05
LIM2P55344 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
LIM2P55344 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
LIM2P55344 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC14.71□□□□□ -0.05
LIM2P55344 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIM2P55344 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIM2P55344 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIM2P55344 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIM2P55344 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
LIM2P55344 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC14.71□□□□□ -0.05
LIM2P55344 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
LIM2P55344 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
LIM2P55344 ZNF385A-201ENST00000338010 2331 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIM2P55344 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIM2P55344 SAMD4A-208ENST00000555192 1337 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LIM2P55344 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
LIM2P55344 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIM2P55344 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LIM2P55344 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LIM2P55344 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIM2P55344 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIM2P55344 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
LIM2P55344 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14.71□□□□□ -0.05
LIM2P55344 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIM2P55344 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIM2P55344 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC14.71□□□□□ -0.05
LIM2P55344 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIM2P55344 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
LIM2P55344 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LIM2P55344 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC14.71□□□□□ -0.05
LIM2P55344 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIM2P55344 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC14.71□□□□□ -0.05
LIM2P55344 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIM2P55344 GREM1-201ENST00000560677 623 ntTSL 4 BASIC14.71□□□□□ -0.05
LIM2P55344 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LIM2P55344 GPX4-206ENST00000588919 803 ntTSL 2 BASIC14.71□□□□□ -0.05
LIM2P55344 AC099568.2-201ENST00000609194 695 ntBASIC14.71□□□□□ -0.05
LIM2P55344 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC14.71□□□□□ -0.05
LIM2P55344 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC14.71□□□□□ -0.05
LIM2P55344 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIM2P55344 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LIM2P55344 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
LIM2P55344 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC14.71□□□□□ -0.05
LIM2P55344 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
LIM2P55344 EIF4G1-202ENST00000346169 5516 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.06
LIM2P55344 AL391825.1-201ENST00000457671 1364 ntBASIC14.71□□□□□ -0.06
LIM2P55344 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC14.71□□□□□ -0.06
LIM2P55344 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
LIM2P55344 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
LIM2P55344 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC14.71□□□□□ -0.06
LIM2P55344 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC14.71□□□□□ -0.06
LIM2P55344 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC14.71□□□□□ -0.06
LIM2P55344 KRT85-201ENST00000257901 2447 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
LIM2P55344 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.06
LIM2P55344 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIM2P55344 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIM2P55344 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC14.7□□□□□ -0.06
LIM2P55344 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LIM2P55344 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
LIM2P55344 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC14.7□□□□□ -0.06
LIM2P55344 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC14.7□□□□□ -0.06
LIM2P55344 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIM2P55344 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC14.7□□□□□ -0.06
LIM2P55344 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LIM2P55344 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIM2P55344 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC14.7□□□□□ -0.06
LIM2P55344 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LIM2P55344 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC14.7□□□□□ -0.06
LIM2P55344 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC14.7□□□□□ -0.06
LIM2P55344 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LIM2P55344 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIM2P55344 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC14.7□□□□□ -0.06
LIM2P55344 CALY-202ENST00000368555 783 ntTSL 2 BASIC14.7□□□□□ -0.06
LIM2P55344 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC14.7□□□□□ -0.06
LIM2P55344 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIM2P55344 PIN1P1-201ENST00000412108 996 ntBASIC14.7□□□□□ -0.06
LIM2P55344 FAM86LP-201ENST00000478302 853 ntBASIC14.7□□□□□ -0.06
LIM2P55344 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LIM2P55344 FADS2-205ENST00000517839 469 ntTSL 3 BASIC14.7□□□□□ -0.06
LIM2P55344 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC14.7□□□□□ -0.06
LIM2P55344 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC14.7□□□□□ -0.06
LIM2P55344 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC14.7□□□□□ -0.06
LIM2P55344 TUBB3-203ENST00000553967 736 ntTSL 2 BASIC14.7□□□□□ -0.06
LIM2P55344 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC14.7□□□□□ -0.06
LIM2P55344 PTPRS-208ENST00000590509 893 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LIM2P55344 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC14.7□□□□□ -0.06
LIM2P55344 AC025181.2-201ENST00000606994 802 ntBASIC14.7□□□□□ -0.06
LIM2P55344 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC14.7□□□□□ -0.06
LIM2P55344 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms