Protein–RNA interactions for Protein: O95096

NKX2-2, Homeobox protein Nkx-2.2, humanhuman

Predictions only

Length 273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-2O95096 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.29□□□□□ -0.12
NKX2-2O95096 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC14.29□□□□□ -0.12
NKX2-2O95096 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC14.29□□□□□ -0.12
NKX2-2O95096 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NKX2-2O95096 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC14.28□□□□□ -0.12
NKX2-2O95096 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX2-2O95096 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX2-2O95096 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX2-2O95096 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NKX2-2O95096 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX2-2O95096 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NKX2-2O95096 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC14.28□□□□□ -0.12
NKX2-2O95096 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC14.28□□□□□ -0.12
NKX2-2O95096 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NKX2-2O95096 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX2-2O95096 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14.28□□□□□ -0.12
NKX2-2O95096 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC14.28□□□□□ -0.12
NKX2-2O95096 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX2-2O95096 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX2-2O95096 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC14.28□□□□□ -0.12
NKX2-2O95096 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NKX2-2O95096 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC14.28□□□□□ -0.12
NKX2-2O95096 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX2-2O95096 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX2-2O95096 DFFBP1-201ENST00000433250 979 ntBASIC14.28□□□□□ -0.12
NKX2-2O95096 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC14.28□□□□□ -0.12
NKX2-2O95096 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC14.28□□□□□ -0.12
NKX2-2O95096 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX2-2O95096 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC14.28□□□□□ -0.12
NKX2-2O95096 AC004066.1-201ENST00000502488 802 ntBASIC14.28□□□□□ -0.12
NKX2-2O95096 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NKX2-2O95096 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC14.28□□□□□ -0.12
NKX2-2O95096 GSN-215ENST00000545652 2428 ntTSL 2 BASIC14.28□□□□□ -0.12
NKX2-2O95096 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC14.28□□□□□ -0.12
NKX2-2O95096 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX2-2O95096 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC14.28□□□□□ -0.12
NKX2-2O95096 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC14.28□□□□□ -0.12
NKX2-2O95096 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC14.28□□□□□ -0.12
NKX2-2O95096 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.28□□□□□ -0.12
NKX2-2O95096 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC14.28□□□□□ -0.12
NKX2-2O95096 BRI3BPP1-201ENST00000594224 787 ntBASIC14.28□□□□□ -0.12
NKX2-2O95096 AL049840.4-201ENST00000602422 811 ntBASIC14.28□□□□□ -0.12
NKX2-2O95096 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC14.28□□□□□ -0.12
NKX2-2O95096 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC14.28□□□□□ -0.12
NKX2-2O95096 PSMC3-213ENST00000619920 1580 ntAPPRIS P2 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX2-2O95096 RNF168-201ENST00000318037 5347 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX2-2O95096 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX2-2O95096 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX2-2O95096 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC14.28□□□□□ -0.12
NKX2-2O95096 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC14.28□□□□□ -0.12
NKX2-2O95096 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.28□□□□□ -0.12
NKX2-2O95096 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
NKX2-2O95096 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
NKX2-2O95096 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
NKX2-2O95096 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.12
NKX2-2O95096 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.12
NKX2-2O95096 PCDHGB8P-201ENST00000502926 1973 ntBASIC14.27□□□□□ -0.12
NKX2-2O95096 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
NKX2-2O95096 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
NKX2-2O95096 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
NKX2-2O95096 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
NKX2-2O95096 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
NKX2-2O95096 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.12
NKX2-2O95096 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
NKX2-2O95096 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
NKX2-2O95096 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
NKX2-2O95096 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC14.27□□□□□ -0.12
NKX2-2O95096 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
NKX2-2O95096 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
NKX2-2O95096 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX2-2O95096 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
NKX2-2O95096 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX2-2O95096 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX2-2O95096 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC14.27□□□□□ -0.13
NKX2-2O95096 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
NKX2-2O95096 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX2-2O95096 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX2-2O95096 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX2-2O95096 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX2-2O95096 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX2-2O95096 MPV17-208ENST00000405076 603 ntTSL 5 BASIC14.27□□□□□ -0.13
NKX2-2O95096 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX2-2O95096 RPL13AP25-201ENST00000484130 612 ntBASIC14.27□□□□□ -0.13
NKX2-2O95096 FADS2-205ENST00000517839 469 ntTSL 3 BASIC14.27□□□□□ -0.13
NKX2-2O95096 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC14.27□□□□□ -0.13
NKX2-2O95096 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.27□□□□□ -0.13
NKX2-2O95096 INO80C-210ENST00000590757 595 ntTSL 2 BASIC14.27□□□□□ -0.13
NKX2-2O95096 AC107373.2-201ENST00000607735 490 ntBASIC14.27□□□□□ -0.13
NKX2-2O95096 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC14.27□□□□□ -0.13
NKX2-2O95096 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC14.27□□□□□ -0.13
NKX2-2O95096 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC14.27□□□□□ -0.13
NKX2-2O95096 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
NKX2-2O95096 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC14.27□□□□□ -0.13
NKX2-2O95096 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX2-2O95096 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX2-2O95096 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX2-2O95096 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX2-2O95096 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
NKX2-2O95096 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
NKX2-2O95096 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 57.6 ms