Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 SLC35A3-209ENST00000638338 2890 ntTSL 5 BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 GRN-214ENST00000589265 1632 ntTSL 5 BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 AL592309.1-201ENST00000443127 649 ntBASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 GATB-205ENST00000508611 605 ntTSL 2 BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 AC106730.1-201ENST00000566722 1090 ntBASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 HSPB7-202ENST00000375718 2415 ntTSL 2 BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 GRK6P1-201ENST00000400595 1711 ntBASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 SLC35C1-201ENST00000314134 4171 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 PEX26-205ENST00000610387 3924 ntTSL 5 BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 ADAMTS14-202ENST00000373208 5269 ntAPPRIS P4 TSL 2 BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 ZEB2-225ENST00000558170 4012 ntAPPRIS P2 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRIM49D1C9J1S8 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
TRIM49D1C9J1S8 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
TRIM49D1C9J1S8 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.09
TRIM49D1C9J1S8 TMPRSS6-202ENST00000381792 3260 ntAPPRIS ALT2 TSL 5 BASIC15.58■□□□□ 0.09
TRIM49D1C9J1S8 MTA3-203ENST00000406652 5484 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
TRIM49D1C9J1S8 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
TRIM49D1C9J1S8 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
TRIM49D1C9J1S8 PPP4R4-201ENST00000304338 3868 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
TRIM49D1C9J1S8 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
TRIM49D1C9J1S8 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
TRIM49D1C9J1S8 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.09
TRIM49D1C9J1S8 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC15.58■□□□□ 0.09
TRIM49D1C9J1S8 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
TRIM49D1C9J1S8 AP000845.1-201ENST00000581677 2131 ntBASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 PATZ1-203ENST00000351933 3638 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 HIST3H2BA-201ENST00000436555 524 ntBASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 BANF1P1-201ENST00000553684 263 ntBASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 AC004706.4-201ENST00000634965 3537 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 MAEL-202ENST00000367872 1908 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 CHRNA7-217ENST00000636603 2012 ntTSL 5 BASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 BCKDHA-201ENST00000269980 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
TRIM49D1C9J1S8 RDX-218ENST00000544551 4117 ntTSL 2 BASIC15.58■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms