Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 INTS4P2-202ENST00000614726 2019 ntBASIC16.52■□□□□ 0.23
CISHQ9NSE2 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CISHQ9NSE2 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC16.51■□□□□ 0.23
CISHQ9NSE2 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CISHQ9NSE2 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC16.51■□□□□ 0.23
CISHQ9NSE2 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CISHQ9NSE2 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC16.51■□□□□ 0.23
CISHQ9NSE2 CHTF18-205ENST00000455171 3172 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
CISHQ9NSE2 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CISHQ9NSE2 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CISHQ9NSE2 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CISHQ9NSE2 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CISHQ9NSE2 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC16.51■□□□□ 0.23
CISHQ9NSE2 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
CISHQ9NSE2 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CISHQ9NSE2 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
CISHQ9NSE2 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CISHQ9NSE2 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CISHQ9NSE2 GHSR-202ENST00000427970 912 ntBASIC16.51■□□□□ 0.23
CISHQ9NSE2 AL442647.2-201ENST00000429864 857 ntBASIC16.51■□□□□ 0.23
CISHQ9NSE2 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC16.51■□□□□ 0.23
CISHQ9NSE2 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC16.51■□□□□ 0.23
CISHQ9NSE2 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CISHQ9NSE2 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.51■□□□□ 0.23
CISHQ9NSE2 CTBP2P3-201ENST00000585629 1255 ntBASIC16.51■□□□□ 0.23
CISHQ9NSE2 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC16.51■□□□□ 0.23
CISHQ9NSE2 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CISHQ9NSE2 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC16.51■□□□□ 0.23
CISHQ9NSE2 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
CISHQ9NSE2 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CISHQ9NSE2 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
CISHQ9NSE2 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CISHQ9NSE2 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
CISHQ9NSE2 ODF2-202ENST00000372791 2375 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
CISHQ9NSE2 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CISHQ9NSE2 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CISHQ9NSE2 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CISHQ9NSE2 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
CISHQ9NSE2 TSPY26P-202ENST00000565928 3884 ntBASIC16.5■□□□□ 0.23
CISHQ9NSE2 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CISHQ9NSE2 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CISHQ9NSE2 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
CISHQ9NSE2 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CISHQ9NSE2 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC16.5■□□□□ 0.23
CISHQ9NSE2 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CISHQ9NSE2 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC16.5■□□□□ 0.23
CISHQ9NSE2 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CISHQ9NSE2 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.5■□□□□ 0.23
CISHQ9NSE2 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC16.5■□□□□ 0.23
CISHQ9NSE2 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC16.5■□□□□ 0.23
CISHQ9NSE2 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CISHQ9NSE2 GDF6-201ENST00000287020 3701 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CISHQ9NSE2 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CISHQ9NSE2 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CISHQ9NSE2 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC16.5■□□□□ 0.23
CISHQ9NSE2 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CISHQ9NSE2 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CISHQ9NSE2 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CISHQ9NSE2 CALY-203ENST00000368558 825 ntTSL 5 BASIC16.5■□□□□ 0.23
CISHQ9NSE2 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CISHQ9NSE2 AC104457.1-201ENST00000401024 814 ntBASIC16.5■□□□□ 0.23
CISHQ9NSE2 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC16.5■□□□□ 0.23
CISHQ9NSE2 AC134915.1-201ENST00000426461 574 ntBASIC16.5■□□□□ 0.23
CISHQ9NSE2 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC16.5■□□□□ 0.23
CISHQ9NSE2 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC16.5■□□□□ 0.23
CISHQ9NSE2 WASH4P-201ENST00000564273 1246 ntBASIC16.5■□□□□ 0.23
CISHQ9NSE2 AC120045.2-201ENST00000567334 178 ntBASIC16.5■□□□□ 0.23
CISHQ9NSE2 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC16.5■□□□□ 0.23
CISHQ9NSE2 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CISHQ9NSE2 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC16.5■□□□□ 0.23
CISHQ9NSE2 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.5■□□□□ 0.23
CISHQ9NSE2 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CISHQ9NSE2 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.5■□□□□ 0.23
CISHQ9NSE2 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC16.5■□□□□ 0.23
CISHQ9NSE2 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CISHQ9NSE2 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC16.5■□□□□ 0.23
CISHQ9NSE2 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CISHQ9NSE2 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CISHQ9NSE2 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.5■□□□□ 0.23
CISHQ9NSE2 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC16.5■□□□□ 0.23
CISHQ9NSE2 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
CISHQ9NSE2 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC16.5■□□□□ 0.23
CISHQ9NSE2 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
CISHQ9NSE2 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
CISHQ9NSE2 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC16.5■□□□□ 0.23
CISHQ9NSE2 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC16.5■□□□□ 0.23
CISHQ9NSE2 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CISHQ9NSE2 DBET-201ENST00000630918 3363 ntBASIC16.49■□□□□ 0.23
CISHQ9NSE2 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC16.49■□□□□ 0.23
CISHQ9NSE2 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
CISHQ9NSE2 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CISHQ9NSE2 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC16.49■□□□□ 0.23
CISHQ9NSE2 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.49■□□□□ 0.23
CISHQ9NSE2 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CISHQ9NSE2 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
CISHQ9NSE2 DERL3-204ENST00000406855 1063 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
CISHQ9NSE2 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC16.49■□□□□ 0.23
CISHQ9NSE2 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC16.49■□□□□ 0.23
CISHQ9NSE2 COX11-202ENST00000571584 1108 ntTSL 2 BASIC16.49■□□□□ 0.23
CISHQ9NSE2 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms