Protein–RNA interactions for Protein: Q8IX90

SKA3, Spindle and kinetochore-associated protein 3, humanhuman

Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3Q8IX90 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SKA3Q8IX90 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SKA3Q8IX90 SEC16A-202ENST00000290037 8982 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
SKA3Q8IX90 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SKA3Q8IX90 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC13.8□□□□□ -0.2
SKA3Q8IX90 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
SKA3Q8IX90 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SKA3Q8IX90 LARP6-201ENST00000299213 4469 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SKA3Q8IX90 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SKA3Q8IX90 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SKA3Q8IX90 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
SKA3Q8IX90 PATZ1-204ENST00000405309 3711 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SKA3Q8IX90 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC13.8□□□□□ -0.2
SKA3Q8IX90 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SKA3Q8IX90 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SKA3Q8IX90 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SKA3Q8IX90 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC13.8□□□□□ -0.2
SKA3Q8IX90 MRPS18AP1-201ENST00000414458 589 ntBASIC13.8□□□□□ -0.2
SKA3Q8IX90 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC13.8□□□□□ -0.2
SKA3Q8IX90 RPL13P2-201ENST00000440687 659 ntBASIC13.8□□□□□ -0.2
SKA3Q8IX90 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC13.8□□□□□ -0.2
SKA3Q8IX90 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC13.8□□□□□ -0.2
SKA3Q8IX90 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC13.8□□□□□ -0.2
SKA3Q8IX90 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SKA3Q8IX90 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
SKA3Q8IX90 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC13.8□□□□□ -0.2
SKA3Q8IX90 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC13.8□□□□□ -0.2
SKA3Q8IX90 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SKA3Q8IX90 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC13.8□□□□□ -0.2
SKA3Q8IX90 CMC2-214ENST00000565925 640 ntTSL 5 BASIC13.8□□□□□ -0.2
SKA3Q8IX90 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC13.8□□□□□ -0.2
SKA3Q8IX90 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SKA3Q8IX90 PRR29-204ENST00000577953 565 ntTSL 4 BASIC13.8□□□□□ -0.2
SKA3Q8IX90 AC008738.7-201ENST00000609744 511 ntBASIC13.8□□□□□ -0.2
SKA3Q8IX90 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SKA3Q8IX90 PHRF1-203ENST00000416188 5227 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
SKA3Q8IX90 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC13.8□□□□□ -0.2
SKA3Q8IX90 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SKA3Q8IX90 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
SKA3Q8IX90 SPHK2-210ENST00000599748 2683 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
SKA3Q8IX90 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
SKA3Q8IX90 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC13.8□□□□□ -0.2
SKA3Q8IX90 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
SKA3Q8IX90 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC13.8□□□□□ -0.2
SKA3Q8IX90 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC13.8□□□□□ -0.2
SKA3Q8IX90 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC13.8□□□□□ -0.2
SKA3Q8IX90 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC13.8□□□□□ -0.2
SKA3Q8IX90 AC090616.6-203ENST00000579186 1945 ntBASIC13.8□□□□□ -0.2
SKA3Q8IX90 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
SKA3Q8IX90 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC13.8□□□□□ -0.2
SKA3Q8IX90 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC13.8□□□□□ -0.2
SKA3Q8IX90 BTBD7P1-201ENST00000447253 1453 ntBASIC13.8□□□□□ -0.2
SKA3Q8IX90 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC13.8□□□□□ -0.2
SKA3Q8IX90 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC13.8□□□□□ -0.2
SKA3Q8IX90 PLXDC1-201ENST00000315392 6252 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SKA3Q8IX90 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SKA3Q8IX90 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC13.79□□□□□ -0.2
SKA3Q8IX90 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC13.79□□□□□ -0.2
SKA3Q8IX90 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SKA3Q8IX90 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
SKA3Q8IX90 TEN1-CDK3-202ENST00000569284 3287 ntAPPRIS P1 TSL 2 BASIC13.79□□□□□ -0.2
SKA3Q8IX90 SLC9A7P1-201ENST00000554295 3311 ntBASIC13.79□□□□□ -0.2
SKA3Q8IX90 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SKA3Q8IX90 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC13.79□□□□□ -0.2
SKA3Q8IX90 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SKA3Q8IX90 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC13.79□□□□□ -0.2
SKA3Q8IX90 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SKA3Q8IX90 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC13.79□□□□□ -0.2
SKA3Q8IX90 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC13.79□□□□□ -0.2
SKA3Q8IX90 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SKA3Q8IX90 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC13.79□□□□□ -0.2
SKA3Q8IX90 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC13.79□□□□□ -0.2
SKA3Q8IX90 SBF1-201ENST00000348911 6045 ntAPPRIS ALT2 TSL 5 BASIC13.79□□□□□ -0.2
SKA3Q8IX90 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SKA3Q8IX90 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC13.79□□□□□ -0.2
SKA3Q8IX90 NFIC-206ENST00000589123 8068 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SKA3Q8IX90 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SKA3Q8IX90 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SKA3Q8IX90 SYS1-203ENST00000414310 795 ntTSL 3 BASIC13.79□□□□□ -0.2
SKA3Q8IX90 HNRNPA1P40-201ENST00000426371 1278 ntBASIC13.79□□□□□ -0.2
SKA3Q8IX90 FAM8A3P-201ENST00000427218 844 ntBASIC13.79□□□□□ -0.2
SKA3Q8IX90 AC114501.2-201ENST00000439631 535 ntBASIC13.79□□□□□ -0.2
SKA3Q8IX90 APOA1-AS-201ENST00000444200 563 ntTSL 4 BASIC13.79□□□□□ -0.2
SKA3Q8IX90 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC13.79□□□□□ -0.2
SKA3Q8IX90 INGX-202ENST00000489074 768 ntBASIC13.79□□□□□ -0.2
SKA3Q8IX90 SLED1-202ENST00000512051 380 ntBASIC13.79□□□□□ -0.2
SKA3Q8IX90 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC13.79□□□□□ -0.2
SKA3Q8IX90 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC13.79□□□□□ -0.2
SKA3Q8IX90 STOM-203ENST00000538954 1257 ntTSL 5 BASIC13.79□□□□□ -0.2
SKA3Q8IX90 AC135586.1-201ENST00000539323 574 ntBASIC13.79□□□□□ -0.2
SKA3Q8IX90 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC13.79□□□□□ -0.2
SKA3Q8IX90 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC13.79□□□□□ -0.2
SKA3Q8IX90 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC13.79□□□□□ -0.2
SKA3Q8IX90 AC004840.1-201ENST00000636359 365 ntBASIC13.79□□□□□ -0.2
SKA3Q8IX90 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC13.79□□□□□ -0.2
SKA3Q8IX90 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SKA3Q8IX90 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SKA3Q8IX90 TBC1D17-202ENST00000535102 2025 ntTSL 2 BASIC13.79□□□□□ -0.2
SKA3Q8IX90 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
SKA3Q8IX90 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC13.79□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms