Protein–RNA interactions for Protein: Q7Z3V4

UBE3B, Ubiquitin-protein ligase E3B, humanhuman

Predictions only

Length 1,068 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3BQ7Z3V4 USH1C-202ENST00000318024 2237 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
UBE3BQ7Z3V4 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 TRIM62-204ENST00000543586 1638 ntTSL 2 BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 HLA-DQB2-231ENST00000435145 2026 ntBASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 NUS1-201ENST00000368494 4676 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 MAX-205ENST00000358664 1546 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 RPF1-202ENST00000370656 724 ntTSL 2 BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 AC092658.1-201ENST00000505836 891 ntBASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 AC011603.1-201ENST00000553174 717 ntTSL 2 BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 AC138951.2-201ENST00000623455 1161 ntBASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 BID-213ENST00000615414 2236 ntTSL 5 BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 GAS7-213ENST00000580865 2417 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
UBE3BQ7Z3V4 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 TPM1-206ENST00000358278 1717 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 RNA5SP412-201ENST00000516234 123 ntBASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 YIF1B-216ENST00000592694 1181 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC19.21■□□□□ 0.67
UBE3BQ7Z3V4 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
UBE3BQ7Z3V4 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC19.2■□□□□ 0.66
UBE3BQ7Z3V4 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC19.2■□□□□ 0.66
UBE3BQ7Z3V4 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC19.2■□□□□ 0.66
UBE3BQ7Z3V4 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
UBE3BQ7Z3V4 KRT8P14-201ENST00000414254 1442 ntBASIC19.2■□□□□ 0.66
UBE3BQ7Z3V4 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
UBE3BQ7Z3V4 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
UBE3BQ7Z3V4 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
UBE3BQ7Z3V4 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC19.2■□□□□ 0.66
UBE3BQ7Z3V4 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
UBE3BQ7Z3V4 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
UBE3BQ7Z3V4 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms