Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
COL12A1Q99715 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL12A1Q99715 AC099791.1-201ENST00000416440 715 ntBASIC20.66■□□□□ 0.9
COL12A1Q99715 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
COL12A1Q99715 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC20.66■□□□□ 0.9
COL12A1Q99715 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.66■□□□□ 0.9
COL12A1Q99715 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
COL12A1Q99715 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
COL12A1Q99715 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
COL12A1Q99715 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL12A1Q99715 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
COL12A1Q99715 AC004448.1-201ENST00000458332 883 ntBASIC20.65■□□□□ 0.9
COL12A1Q99715 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC20.65■□□□□ 0.9
COL12A1Q99715 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
COL12A1Q99715 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC20.64■□□□□ 0.89
COL12A1Q99715 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC20.64■□□□□ 0.89
COL12A1Q99715 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
COL12A1Q99715 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.64■□□□□ 0.89
COL12A1Q99715 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL12A1Q99715 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
COL12A1Q99715 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.63■□□□□ 0.89
COL12A1Q99715 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC20.63■□□□□ 0.89
COL12A1Q99715 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC20.63■□□□□ 0.89
COL12A1Q99715 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC20.62■□□□□ 0.89
COL12A1Q99715 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL12A1Q99715 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC20.62■□□□□ 0.89
COL12A1Q99715 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL12A1Q99715 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC20.62■□□□□ 0.89
COL12A1Q99715 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
COL12A1Q99715 SERBP1P1-201ENST00000396021 1160 ntBASIC20.62■□□□□ 0.89
COL12A1Q99715 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC20.61■□□□□ 0.89
COL12A1Q99715 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL12A1Q99715 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC20.61■□□□□ 0.89
COL12A1Q99715 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL12A1Q99715 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
COL12A1Q99715 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.61■□□□□ 0.89
COL12A1Q99715 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.61■□□□□ 0.89
COL12A1Q99715 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.61■□□□□ 0.89
COL12A1Q99715 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL12A1Q99715 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
COL12A1Q99715 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL12A1Q99715 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL12A1Q99715 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
COL12A1Q99715 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL12A1Q99715 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC20.6■□□□□ 0.89
COL12A1Q99715 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC20.6■□□□□ 0.89
COL12A1Q99715 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
COL12A1Q99715 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.59■□□□□ 0.89
COL12A1Q99715 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL12A1Q99715 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC20.59■□□□□ 0.89
COL12A1Q99715 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL12A1Q99715 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC20.59■□□□□ 0.89
COL12A1Q99715 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL12A1Q99715 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.59■□□□□ 0.89
COL12A1Q99715 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC20.59■□□□□ 0.89
COL12A1Q99715 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC20.59■□□□□ 0.89
COL12A1Q99715 AC233992.3-201ENST00000607491 485 ntBASIC20.59■□□□□ 0.89
COL12A1Q99715 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
COL12A1Q99715 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL12A1Q99715 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL12A1Q99715 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
COL12A1Q99715 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL12A1Q99715 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL12A1Q99715 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
COL12A1Q99715 DCBLD1-201ENST00000296955 1979 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL12A1Q99715 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
COL12A1Q99715 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC20.57■□□□□ 0.88
COL12A1Q99715 AC104771.1-201ENST00000603335 964 ntBASIC20.57■□□□□ 0.88
COL12A1Q99715 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL12A1Q99715 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.57■□□□□ 0.88
COL12A1Q99715 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.57■□□□□ 0.88
COL12A1Q99715 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.57■□□□□ 0.88
COL12A1Q99715 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL12A1Q99715 SLC25A10-202ENST00000350690 1885 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL12A1Q99715 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL12A1Q99715 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
COL12A1Q99715 AC123595.1-201ENST00000440769 1046 ntBASIC20.57■□□□□ 0.88
COL12A1Q99715 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC20.57■□□□□ 0.88
COL12A1Q99715 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20.57■□□□□ 0.88
COL12A1Q99715 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC20.57■□□□□ 0.88
COL12A1Q99715 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
COL12A1Q99715 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC20.56■□□□□ 0.88
COL12A1Q99715 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.56■□□□□ 0.88
COL12A1Q99715 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.56■□□□□ 0.88
COL12A1Q99715 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.56■□□□□ 0.88
COL12A1Q99715 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL12A1Q99715 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
COL12A1Q99715 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.55■□□□□ 0.88
COL12A1Q99715 NGB-201ENST00000298352 1884 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL12A1Q99715 COL13A1-214ENST00000522165 2061 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
COL12A1Q99715 VEGFC-202ENST00000618562 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL12A1Q99715 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL12A1Q99715 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
COL12A1Q99715 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC20.55■□□□□ 0.88
COL12A1Q99715 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
COL12A1Q99715 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
COL12A1Q99715 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
COL12A1Q99715 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.54■□□□□ 0.88
COL12A1Q99715 LINC01003-201ENST00000564834 1764 ntBASIC20.54■□□□□ 0.88
COL12A1Q99715 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms