Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC32.75■■■□□ 2.83
USP47Q96K76 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC32.75■■■□□ 2.83
USP47Q96K76 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC32.75■■■□□ 2.83
USP47Q96K76 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
USP47Q96K76 CSNK1G3-207ENST00000512718 1569 ntTSL 2 BASIC32.75■■■□□ 2.83
USP47Q96K76 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC32.74■■■□□ 2.83
USP47Q96K76 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC32.74■■■□□ 2.83
USP47Q96K76 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC32.74■■■□□ 2.83
USP47Q96K76 AC239859.2-201ENST00000444165 318 ntBASIC32.73■■■□□ 2.83
USP47Q96K76 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC32.73■■■□□ 2.83
USP47Q96K76 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC32.73■■■□□ 2.83
USP47Q96K76 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC32.73■■■□□ 2.83
USP47Q96K76 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
USP47Q96K76 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC32.72■■■□□ 2.83
USP47Q96K76 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC32.72■■■□□ 2.83
USP47Q96K76 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC32.72■■■□□ 2.83
USP47Q96K76 PXK-201ENST00000302779 1974 ntTSL 1 (best) BASIC32.72■■■□□ 2.83
USP47Q96K76 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC32.72■■■□□ 2.83
USP47Q96K76 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC32.72■■■□□ 2.83
USP47Q96K76 HES6-204ENST00000409182 863 ntTSL 2 BASIC32.71■■■□□ 2.83
USP47Q96K76 GUSBP5-201ENST00000418136 578 ntBASIC32.71■■■□□ 2.83
USP47Q96K76 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC32.71■■■□□ 2.83
USP47Q96K76 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC32.71■■■□□ 2.83
USP47Q96K76 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC32.7■■■□□ 2.83
USP47Q96K76 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC32.7■■■□□ 2.83
USP47Q96K76 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC32.7■■■□□ 2.83
USP47Q96K76 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC32.7■■■□□ 2.83
USP47Q96K76 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC32.7■■■□□ 2.82
USP47Q96K76 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC32.7■■■□□ 2.82
USP47Q96K76 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC32.7■■■□□ 2.82
USP47Q96K76 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC32.7■■■□□ 2.82
USP47Q96K76 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC32.7■■■□□ 2.82
USP47Q96K76 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC32.69■■■□□ 2.82
USP47Q96K76 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC32.69■■■□□ 2.82
USP47Q96K76 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
USP47Q96K76 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
USP47Q96K76 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
USP47Q96K76 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
USP47Q96K76 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC32.68■■■□□ 2.82
USP47Q96K76 AC131274.2-201ENST00000580697 1507 ntBASIC32.68■■■□□ 2.82
USP47Q96K76 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
USP47Q96K76 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC32.68■■■□□ 2.82
USP47Q96K76 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
USP47Q96K76 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
USP47Q96K76 AZIN2-201ENST00000294517 2182 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
USP47Q96K76 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
USP47Q96K76 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
USP47Q96K76 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC32.67■■■□□ 2.82
USP47Q96K76 MIR4787-201ENST00000607364 84 ntBASIC32.67■■■□□ 2.82
USP47Q96K76 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC32.67■■■□□ 2.82
USP47Q96K76 KRT125P-201ENST00000546827 989 ntBASIC32.66■■■□□ 2.82
USP47Q96K76 EED-207ENST00000528180 1745 ntTSL 5 BASIC32.66■■■□□ 2.82
USP47Q96K76 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC32.66■■■□□ 2.82
USP47Q96K76 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
USP47Q96K76 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC32.66■■■□□ 2.82
USP47Q96K76 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
USP47Q96K76 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
USP47Q96K76 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC32.65■■■□□ 2.82
USP47Q96K76 CREM-229ENST00000474362 1030 ntTSL 2 BASIC32.65■■■□□ 2.82
USP47Q96K76 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC32.65■■■□□ 2.82
USP47Q96K76 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC32.65■■■□□ 2.82
USP47Q96K76 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC32.65■■■□□ 2.82
USP47Q96K76 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC32.65■■■□□ 2.82
USP47Q96K76 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC32.65■■■□□ 2.82
USP47Q96K76 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC32.64■■■□□ 2.82
USP47Q96K76 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
USP47Q96K76 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC32.64■■■□□ 2.82
USP47Q96K76 LBH-205ENST00000407930 756 ntTSL 2 BASIC32.64■■■□□ 2.82
USP47Q96K76 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC32.64■■■□□ 2.82
USP47Q96K76 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC32.63■■■□□ 2.81
USP47Q96K76 TK2-202ENST00000417693 1046 ntTSL 2 BASIC32.63■■■□□ 2.81
USP47Q96K76 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC32.63■■■□□ 2.81
USP47Q96K76 AC012123.1-201ENST00000426194 1661 ntTSL 5 BASIC32.62■■■□□ 2.81
USP47Q96K76 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC32.62■■■□□ 2.81
USP47Q96K76 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC32.62■■■□□ 2.81
USP47Q96K76 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC32.62■■■□□ 2.81
USP47Q96K76 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC32.62■■■□□ 2.81
USP47Q96K76 SNX5-217ENST00000606557 1087 ntBASIC32.62■■■□□ 2.81
USP47Q96K76 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC32.62■■■□□ 2.81
USP47Q96K76 TMEM202-AS1-202ENST00000565181 2325 ntBASIC32.62■■■□□ 2.81
USP47Q96K76 AC135731.1-201ENST00000569415 2548 ntBASIC32.61■■■□□ 2.81
USP47Q96K76 AL139125.2-201ENST00000623134 1869 ntBASIC32.61■■■□□ 2.81
USP47Q96K76 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC32.61■■■□□ 2.81
USP47Q96K76 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC32.6■■■□□ 2.81
USP47Q96K76 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC32.6■■■□□ 2.81
USP47Q96K76 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC32.6■■■□□ 2.81
USP47Q96K76 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC32.6■■■□□ 2.81
USP47Q96K76 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC32.6■■■□□ 2.81
USP47Q96K76 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC32.6■■■□□ 2.81
USP47Q96K76 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
USP47Q96K76 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC32.59■■■□□ 2.81
USP47Q96K76 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC32.59■■■□□ 2.81
USP47Q96K76 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC32.59■■■□□ 2.81
USP47Q96K76 CD37-213ENST00000598095 1598 ntTSL 2 BASIC32.59■■■□□ 2.81
USP47Q96K76 UNC93B8-201ENST00000511903 705 ntBASIC32.58■■■□□ 2.81
USP47Q96K76 AC092028.1-203ENST00000608262 953 ntBASIC32.58■■■□□ 2.81
USP47Q96K76 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC32.58■■■□□ 2.81
USP47Q96K76 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC32.58■■■□□ 2.81
USP47Q96K76 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC32.58■■■□□ 2.81
USP47Q96K76 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC32.58■■■□□ 2.81
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms