Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 AC087393.1-201ENST00000582896 145 ntBASIC21.09■□□□□ 0.97
NIPAL3Q6P499 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.09■□□□□ 0.97
NIPAL3Q6P499 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
NIPAL3Q6P499 AC133561.1-201ENST00000568600 2415 ntBASIC21.08■□□□□ 0.97
NIPAL3Q6P499 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NIPAL3Q6P499 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NIPAL3Q6P499 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NIPAL3Q6P499 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
NIPAL3Q6P499 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC21.08■□□□□ 0.97
NIPAL3Q6P499 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
NIPAL3Q6P499 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC21.08■□□□□ 0.97
NIPAL3Q6P499 LMAN2-208ENST00000515209 1149 ntAPPRIS ALT2 TSL 3 BASIC21.08■□□□□ 0.97
NIPAL3Q6P499 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
NIPAL3Q6P499 BHLHE23-202ENST00000612929 1109 ntBASIC21.08■□□□□ 0.97
NIPAL3Q6P499 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC21.08■□□□□ 0.96
NIPAL3Q6P499 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
NIPAL3Q6P499 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC21.08■□□□□ 0.96
NIPAL3Q6P499 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
NIPAL3Q6P499 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
NIPAL3Q6P499 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NIPAL3Q6P499 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
NIPAL3Q6P499 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC21.07■□□□□ 0.96
NIPAL3Q6P499 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NIPAL3Q6P499 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC21.07■□□□□ 0.96
NIPAL3Q6P499 AC004812.2-201ENST00000611079 2094 ntBASIC21.07■□□□□ 0.96
NIPAL3Q6P499 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC21.07■□□□□ 0.96
NIPAL3Q6P499 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC21.07■□□□□ 0.96
NIPAL3Q6P499 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NIPAL3Q6P499 LSR-205ENST00000427250 1606 ntTSL 2 BASIC21.07■□□□□ 0.96
NIPAL3Q6P499 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.07■□□□□ 0.96
NIPAL3Q6P499 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
NIPAL3Q6P499 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
NIPAL3Q6P499 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NIPAL3Q6P499 SNX18-201ENST00000326277 2063 ntTSL 2 BASIC21.06■□□□□ 0.96
NIPAL3Q6P499 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
NIPAL3Q6P499 GUK1-208ENST00000366728 842 ntTSL 2 BASIC21.06■□□□□ 0.96
NIPAL3Q6P499 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
NIPAL3Q6P499 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC21.06■□□□□ 0.96
NIPAL3Q6P499 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
NIPAL3Q6P499 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
NIPAL3Q6P499 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
NIPAL3Q6P499 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
NIPAL3Q6P499 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
NIPAL3Q6P499 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NIPAL3Q6P499 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
NIPAL3Q6P499 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC21.05■□□□□ 0.96
NIPAL3Q6P499 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
NIPAL3Q6P499 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC21.04■□□□□ 0.96
NIPAL3Q6P499 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NIPAL3Q6P499 AC012676.1-201ENST00000574705 1949 ntBASIC21.04■□□□□ 0.96
NIPAL3Q6P499 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
NIPAL3Q6P499 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
NIPAL3Q6P499 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
NIPAL3Q6P499 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NIPAL3Q6P499 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
NIPAL3Q6P499 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NIPAL3Q6P499 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NIPAL3Q6P499 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC21.03■□□□□ 0.96
NIPAL3Q6P499 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NIPAL3Q6P499 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
NIPAL3Q6P499 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
NIPAL3Q6P499 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NIPAL3Q6P499 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
NIPAL3Q6P499 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NIPAL3Q6P499 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC21.02■□□□□ 0.96
NIPAL3Q6P499 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC21.02■□□□□ 0.96
NIPAL3Q6P499 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC21.02■□□□□ 0.96
NIPAL3Q6P499 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
NIPAL3Q6P499 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
NIPAL3Q6P499 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NIPAL3Q6P499 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
NIPAL3Q6P499 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.01■□□□□ 0.95
NIPAL3Q6P499 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NIPAL3Q6P499 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC21.01■□□□□ 0.95
NIPAL3Q6P499 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC21.01■□□□□ 0.95
NIPAL3Q6P499 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
NIPAL3Q6P499 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NIPAL3Q6P499 AC068473.5-201ENST00000616428 2072 ntBASIC21.01■□□□□ 0.95
NIPAL3Q6P499 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NIPAL3Q6P499 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
NIPAL3Q6P499 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
NIPAL3Q6P499 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC21.01■□□□□ 0.95
NIPAL3Q6P499 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
NIPAL3Q6P499 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC21■□□□□ 0.95
NIPAL3Q6P499 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NIPAL3Q6P499 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC21■□□□□ 0.95
NIPAL3Q6P499 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NIPAL3Q6P499 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
NIPAL3Q6P499 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC21■□□□□ 0.95
NIPAL3Q6P499 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC21■□□□□ 0.95
NIPAL3Q6P499 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC21■□□□□ 0.95
NIPAL3Q6P499 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC21■□□□□ 0.95
NIPAL3Q6P499 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
NIPAL3Q6P499 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
NIPAL3Q6P499 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
NIPAL3Q6P499 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC20.99■□□□□ 0.95
NIPAL3Q6P499 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC20.99■□□□□ 0.95
NIPAL3Q6P499 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
NIPAL3Q6P499 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.99■□□□□ 0.95
NIPAL3Q6P499 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms