Protein–RNA interactions for Protein: Q68DE3

USF3, Basic helix-loop-helix domain-containing protein USF3, humanhuman

Predictions only

Length 2,245 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF3Q68DE3 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
USF3Q68DE3 AC096631.2-201ENST00000436136 790 ntBASIC19.98■□□□□ 0.79
USF3Q68DE3 DUSP8P4-201ENST00000399538 1761 ntBASIC19.98■□□□□ 0.79
USF3Q68DE3 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USF3Q68DE3 ST6GALNAC2-201ENST00000225276 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USF3Q68DE3 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USF3Q68DE3 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
USF3Q68DE3 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USF3Q68DE3 GAK-223ENST00000628912 497 ntTSL 5 BASIC19.97■□□□□ 0.79
USF3Q68DE3 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
USF3Q68DE3 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
USF3Q68DE3 AC145676.1-201ENST00000514988 2004 ntBASIC19.96■□□□□ 0.79
USF3Q68DE3 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC19.96■□□□□ 0.79
USF3Q68DE3 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
USF3Q68DE3 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
USF3Q68DE3 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC19.96■□□□□ 0.79
USF3Q68DE3 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USF3Q68DE3 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
USF3Q68DE3 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC19.95■□□□□ 0.78
USF3Q68DE3 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
USF3Q68DE3 PKM-204ENST00000449901 2526 ntTSL 2 BASIC19.95■□□□□ 0.78
USF3Q68DE3 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC19.94■□□□□ 0.78
USF3Q68DE3 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
USF3Q68DE3 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
USF3Q68DE3 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
USF3Q68DE3 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
USF3Q68DE3 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
USF3Q68DE3 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC19.94■□□□□ 0.78
USF3Q68DE3 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC19.94■□□□□ 0.78
USF3Q68DE3 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC19.93■□□□□ 0.78
USF3Q68DE3 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
USF3Q68DE3 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
USF3Q68DE3 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
USF3Q68DE3 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
USF3Q68DE3 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
USF3Q68DE3 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USF3Q68DE3 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC19.93■□□□□ 0.78
USF3Q68DE3 RASSF1-AS1-201ENST00000629828 790 ntBASIC19.93■□□□□ 0.78
USF3Q68DE3 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
USF3Q68DE3 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USF3Q68DE3 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
USF3Q68DE3 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC19.93■□□□□ 0.78
USF3Q68DE3 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USF3Q68DE3 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC19.92■□□□□ 0.78
USF3Q68DE3 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
USF3Q68DE3 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USF3Q68DE3 TSKU-201ENST00000333090 2712 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USF3Q68DE3 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USF3Q68DE3 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USF3Q68DE3 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC19.92■□□□□ 0.78
USF3Q68DE3 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
USF3Q68DE3 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
USF3Q68DE3 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC19.92■□□□□ 0.78
USF3Q68DE3 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC19.92■□□□□ 0.78
USF3Q68DE3 CLTA-210ENST00000540080 989 ntTSL 2 BASIC19.92■□□□□ 0.78
USF3Q68DE3 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
USF3Q68DE3 SUDS3P1-201ENST00000505831 966 ntBASIC19.91■□□□□ 0.78
USF3Q68DE3 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC19.91■□□□□ 0.78
USF3Q68DE3 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC19.91■□□□□ 0.78
USF3Q68DE3 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC19.91■□□□□ 0.78
USF3Q68DE3 C1QTNF1-206ENST00000579760 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USF3Q68DE3 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC19.91■□□□□ 0.78
USF3Q68DE3 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC19.91■□□□□ 0.78
USF3Q68DE3 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
USF3Q68DE3 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USF3Q68DE3 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
USF3Q68DE3 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC19.9■□□□□ 0.78
USF3Q68DE3 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
USF3Q68DE3 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
USF3Q68DE3 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
USF3Q68DE3 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC19.9■□□□□ 0.78
USF3Q68DE3 AK3-203ENST00000447596 705 ntTSL 2 BASIC19.9■□□□□ 0.78
USF3Q68DE3 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC19.9■□□□□ 0.78
USF3Q68DE3 AC010501.1-201ENST00000606270 1962 ntBASIC19.9■□□□□ 0.78
USF3Q68DE3 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
USF3Q68DE3 FOXO3B-201ENST00000395675 1928 ntBASIC19.89■□□□□ 0.77
USF3Q68DE3 AC096887.2-201ENST00000623443 1957 ntBASIC19.89■□□□□ 0.77
USF3Q68DE3 TFPT-201ENST00000391757 774 ntTSL 5 BASIC19.89■□□□□ 0.77
USF3Q68DE3 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
USF3Q68DE3 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
USF3Q68DE3 ZNRF2P3-201ENST00000424200 374 ntBASIC19.89■□□□□ 0.77
USF3Q68DE3 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
USF3Q68DE3 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
USF3Q68DE3 CD72-202ENST00000378430 585 ntTSL 3 BASIC19.88■□□□□ 0.77
USF3Q68DE3 SNX5-217ENST00000606557 1087 ntBASIC19.88■□□□□ 0.77
USF3Q68DE3 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USF3Q68DE3 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC19.88■□□□□ 0.77
USF3Q68DE3 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USF3Q68DE3 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
USF3Q68DE3 AC133561.4-201ENST00000566112 224 ntBASIC19.88■□□□□ 0.77
USF3Q68DE3 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USF3Q68DE3 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USF3Q68DE3 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC19.87■□□□□ 0.77
USF3Q68DE3 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC19.87■□□□□ 0.77
USF3Q68DE3 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
USF3Q68DE3 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
USF3Q68DE3 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC19.87■□□□□ 0.77
USF3Q68DE3 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC19.87■□□□□ 0.77
USF3Q68DE3 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
USF3Q68DE3 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms