Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC17.34■□□□□ 0.37
FOXA3P55318 PARP9-207ENST00000492382 1837 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA3P55318 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA3P55318 LINC00565-201ENST00000562710 2331 ntBASIC17.34■□□□□ 0.37
FOXA3P55318 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC17.34■□□□□ 0.37
FOXA3P55318 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA3P55318 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA3P55318 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
FOXA3P55318 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
FOXA3P55318 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
FOXA3P55318 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.37
FOXA3P55318 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.37
FOXA3P55318 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC17.33■□□□□ 0.37
FOXA3P55318 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
FOXA3P55318 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
FOXA3P55318 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
FOXA3P55318 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
FOXA3P55318 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
FOXA3P55318 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC17.33■□□□□ 0.36
FOXA3P55318 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
FOXA3P55318 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA3P55318 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA3P55318 EP400NL-214ENST00000641289 2402 ntBASIC17.32■□□□□ 0.36
FOXA3P55318 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA3P55318 AL359258.2-201ENST00000564063 1566 ntBASIC17.32■□□□□ 0.36
FOXA3P55318 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA3P55318 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA3P55318 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC17.32■□□□□ 0.36
FOXA3P55318 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA3P55318 AC148477.6-201ENST00000623746 465 ntBASIC17.32■□□□□ 0.36
FOXA3P55318 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA3P55318 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA3P55318 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA3P55318 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
FOXA3P55318 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
FOXA3P55318 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC17.32■□□□□ 0.36
FOXA3P55318 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA3P55318 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA3P55318 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA3P55318 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA3P55318 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA3P55318 AC008813.1-201ENST00000536597 885 ntBASIC17.31■□□□□ 0.36
FOXA3P55318 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA3P55318 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA3P55318 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA3P55318 MIR219A2-201ENST00000608502 1504 ntBASIC17.31■□□□□ 0.36
FOXA3P55318 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
FOXA3P55318 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA3P55318 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA3P55318 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA3P55318 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA3P55318 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
FOXA3P55318 C1QTNF5-202ENST00000528368 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA3P55318 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA3P55318 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC17.3■□□□□ 0.36
FOXA3P55318 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC17.3■□□□□ 0.36
FOXA3P55318 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC17.3■□□□□ 0.36
FOXA3P55318 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
FOXA3P55318 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA3P55318 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA3P55318 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA3P55318 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA3P55318 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
FOXA3P55318 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXA3P55318 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXA3P55318 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC17.29■□□□□ 0.36
FOXA3P55318 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
FOXA3P55318 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
FOXA3P55318 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXA3P55318 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXA3P55318 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
FOXA3P55318 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
FOXA3P55318 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
FOXA3P55318 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
FOXA3P55318 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXA3P55318 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
FOXA3P55318 AC233723.2-201ENST00000623798 2106 ntBASIC17.29■□□□□ 0.36
FOXA3P55318 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXA3P55318 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
FOXA3P55318 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXA3P55318 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXA3P55318 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
FOXA3P55318 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXA3P55318 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
FOXA3P55318 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC17.28■□□□□ 0.36
FOXA3P55318 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC17.28■□□□□ 0.36
FOXA3P55318 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC17.28■□□□□ 0.36
FOXA3P55318 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXA3P55318 EFS-203ENST00000429593 2610 ntTSL 2 BASIC17.28■□□□□ 0.36
FOXA3P55318 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXA3P55318 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXA3P55318 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
FOXA3P55318 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
FOXA3P55318 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
FOXA3P55318 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
FOXA3P55318 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
FOXA3P55318 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
FOXA3P55318 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
FOXA3P55318 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
FOXA3P55318 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 14.4 ms