Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
TRIM13O60858 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC22.83■■□□□ 1.25
TRIM13O60858 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
TRIM13O60858 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC22.83■■□□□ 1.24
TRIM13O60858 ME2-208ENST00000638937 2471 ntTSL 5 BASIC22.82■■□□□ 1.24
TRIM13O60858 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC22.82■■□□□ 1.24
TRIM13O60858 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC22.82■■□□□ 1.24
TRIM13O60858 DLK2-202ENST00000372485 1572 ntAPPRIS ALT1 TSL 5 BASIC22.82■■□□□ 1.24
TRIM13O60858 CEP120-209ENST00000515110 606 ntTSL 3 BASIC22.82■■□□□ 1.24
TRIM13O60858 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
TRIM13O60858 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
TRIM13O60858 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC22.81■■□□□ 1.24
TRIM13O60858 NFE2L3P1-201ENST00000588207 1959 ntBASIC22.81■■□□□ 1.24
TRIM13O60858 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
TRIM13O60858 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC22.81■■□□□ 1.24
TRIM13O60858 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
TRIM13O60858 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC22.8■■□□□ 1.24
TRIM13O60858 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC22.8■■□□□ 1.24
TRIM13O60858 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
TRIM13O60858 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC22.79■■□□□ 1.24
TRIM13O60858 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
TRIM13O60858 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC22.79■■□□□ 1.24
TRIM13O60858 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC22.79■■□□□ 1.24
TRIM13O60858 C1orf122-201ENST00000373042 973 ntAPPRIS P3 TSL 1 (best) BASIC22.79■■□□□ 1.24
TRIM13O60858 RPS2-202ENST00000526522 924 ntTSL 2 BASIC22.79■■□□□ 1.24
TRIM13O60858 AC026202.3-201ENST00000600805 1127 ntBASIC22.79■■□□□ 1.24
TRIM13O60858 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
TRIM13O60858 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
TRIM13O60858 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC22.79■■□□□ 1.24
TRIM13O60858 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC22.79■■□□□ 1.24
TRIM13O60858 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC22.79■■□□□ 1.24
TRIM13O60858 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC22.78■■□□□ 1.24
TRIM13O60858 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC22.78■■□□□ 1.24
TRIM13O60858 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC22.78■■□□□ 1.24
TRIM13O60858 BLOC1S3-202ENST00000587722 732 ntAPPRIS P1 BASIC22.78■■□□□ 1.24
TRIM13O60858 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC22.78■■□□□ 1.24
TRIM13O60858 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
TRIM13O60858 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
TRIM13O60858 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC22.78■■□□□ 1.24
TRIM13O60858 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.78■■□□□ 1.24
TRIM13O60858 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
TRIM13O60858 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC22.77■■□□□ 1.24
TRIM13O60858 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC22.77■■□□□ 1.24
TRIM13O60858 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
TRIM13O60858 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC22.77■■□□□ 1.24
TRIM13O60858 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC22.77■■□□□ 1.24
TRIM13O60858 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
TRIM13O60858 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC22.77■■□□□ 1.24
TRIM13O60858 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
TRIM13O60858 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.24
TRIM13O60858 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC22.77■■□□□ 1.24
TRIM13O60858 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC22.77■■□□□ 1.23
TRIM13O60858 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC22.77■■□□□ 1.23
TRIM13O60858 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC22.76■■□□□ 1.23
TRIM13O60858 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
TRIM13O60858 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC22.76■■□□□ 1.23
TRIM13O60858 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC22.76■■□□□ 1.23
TRIM13O60858 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC22.76■■□□□ 1.23
TRIM13O60858 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC22.76■■□□□ 1.23
TRIM13O60858 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
TRIM13O60858 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
TRIM13O60858 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC22.75■■□□□ 1.23
TRIM13O60858 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC22.75■■□□□ 1.23
TRIM13O60858 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
TRIM13O60858 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC22.75■■□□□ 1.23
TRIM13O60858 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC22.75■■□□□ 1.23
TRIM13O60858 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC22.75■■□□□ 1.23
TRIM13O60858 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC22.75■■□□□ 1.23
TRIM13O60858 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC22.75■■□□□ 1.23
TRIM13O60858 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
TRIM13O60858 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
TRIM13O60858 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
TRIM13O60858 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC22.74■■□□□ 1.23
TRIM13O60858 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
TRIM13O60858 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC22.74■■□□□ 1.23
TRIM13O60858 HES4-202ENST00000428771 1040 ntTSL 2 BASIC22.74■■□□□ 1.23
TRIM13O60858 PVT1-219ENST00000523427 938 ntTSL 3 BASIC22.74■■□□□ 1.23
TRIM13O60858 C9orf163-202ENST00000624034 2573 ntBASIC22.74■■□□□ 1.23
TRIM13O60858 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC22.74■■□□□ 1.23
TRIM13O60858 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC22.74■■□□□ 1.23
TRIM13O60858 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC22.73■■□□□ 1.23
TRIM13O60858 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC22.73■■□□□ 1.23
TRIM13O60858 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC22.73■■□□□ 1.23
TRIM13O60858 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC22.73■■□□□ 1.23
TRIM13O60858 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC22.73■■□□□ 1.23
TRIM13O60858 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC22.73■■□□□ 1.23
TRIM13O60858 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC22.72■■□□□ 1.23
TRIM13O60858 HSPBP1-202ENST00000433386 1572 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
TRIM13O60858 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
TRIM13O60858 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC22.72■■□□□ 1.23
TRIM13O60858 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC22.72■■□□□ 1.23
TRIM13O60858 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC22.72■■□□□ 1.23
TRIM13O60858 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
TRIM13O60858 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
TRIM13O60858 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
TRIM13O60858 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
TRIM13O60858 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
TRIM13O60858 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
TRIM13O60858 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC22.71■■□□□ 1.23
TRIM13O60858 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms