Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SDCBPO00560 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SDCBPO00560 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SDCBPO00560 ME2-208ENST00000638937 2471 ntTSL 5 BASIC19.65■□□□□ 0.74
SDCBPO00560 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SDCBPO00560 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
SDCBPO00560 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
SDCBPO00560 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SDCBPO00560 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
SDCBPO00560 LSR-205ENST00000427250 1606 ntTSL 2 BASIC19.65■□□□□ 0.74
SDCBPO00560 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
SDCBPO00560 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC19.64■□□□□ 0.74
SDCBPO00560 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SDCBPO00560 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
SDCBPO00560 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC19.64■□□□□ 0.73
SDCBPO00560 ST3GAL5-214ENST00000638178 2034 ntTSL 5 BASIC19.64■□□□□ 0.73
SDCBPO00560 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
SDCBPO00560 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SDCBPO00560 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SDCBPO00560 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SDCBPO00560 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC19.63■□□□□ 0.73
SDCBPO00560 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
SDCBPO00560 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC19.63■□□□□ 0.73
SDCBPO00560 C16orf87-201ENST00000285697 1585 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
SDCBPO00560 WTAP-207ENST00000631126 1430 ntTSL 3 BASIC19.63■□□□□ 0.73
SDCBPO00560 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
SDCBPO00560 AC026202.3-201ENST00000600805 1127 ntBASIC19.63■□□□□ 0.73
SDCBPO00560 RAP2CP1-202ENST00000605179 643 ntBASIC19.63■□□□□ 0.73
SDCBPO00560 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SDCBPO00560 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SDCBPO00560 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SDCBPO00560 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SDCBPO00560 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC19.62■□□□□ 0.73
SDCBPO00560 HES4-204ENST00000484667 667 ntTSL 3 BASIC19.62■□□□□ 0.73
SDCBPO00560 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
SDCBPO00560 C9orf163-202ENST00000624034 2573 ntBASIC19.62■□□□□ 0.73
SDCBPO00560 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
SDCBPO00560 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC19.61■□□□□ 0.73
SDCBPO00560 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
SDCBPO00560 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
SDCBPO00560 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC19.61■□□□□ 0.73
SDCBPO00560 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SDCBPO00560 SHD-204ENST00000599689 1729 ntTSL 5 BASIC19.6■□□□□ 0.73
SDCBPO00560 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
SDCBPO00560 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
SDCBPO00560 MIR6089-201ENST00000616698 64 ntBASIC19.6■□□□□ 0.73
SDCBPO00560 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC19.6■□□□□ 0.73
SDCBPO00560 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC19.6■□□□□ 0.73
SDCBPO00560 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SDCBPO00560 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SDCBPO00560 GGH-201ENST00000260118 1607 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SDCBPO00560 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC19.59■□□□□ 0.73
SDCBPO00560 RCCD1-206ENST00000556618 1556 ntAPPRIS P2 TSL 5 BASIC19.59■□□□□ 0.73
SDCBPO00560 AC133552.2-201ENST00000619106 1032 ntBASIC19.59■□□□□ 0.73
SDCBPO00560 RASL10A-201ENST00000216101 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SDCBPO00560 TMEM120A-214ENST00000493111 1456 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SDCBPO00560 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SDCBPO00560 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SDCBPO00560 DONSON-201ENST00000303071 2170 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
SDCBPO00560 SLC39A2-201ENST00000298681 1379 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
SDCBPO00560 SLAIN1-213ENST00000466548 2637 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
SDCBPO00560 AC009831.1-201ENST00000580420 1582 ntBASIC19.58■□□□□ 0.73
SDCBPO00560 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
SDCBPO00560 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
SDCBPO00560 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SDCBPO00560 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SDCBPO00560 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SDCBPO00560 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SDCBPO00560 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
SDCBPO00560 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SDCBPO00560 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SDCBPO00560 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
SDCBPO00560 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
SDCBPO00560 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SDCBPO00560 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SDCBPO00560 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
SDCBPO00560 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SDCBPO00560 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
SDCBPO00560 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SDCBPO00560 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SDCBPO00560 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC19.56■□□□□ 0.72
SDCBPO00560 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SDCBPO00560 ZNF444-211ENST00000592949 1906 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
SDCBPO00560 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC19.56■□□□□ 0.72
SDCBPO00560 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SDCBPO00560 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
SDCBPO00560 KRT72-203ENST00000537672 1813 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
SDCBPO00560 ADSSL1-202ENST00000332972 1969 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SDCBPO00560 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SDCBPO00560 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
SDCBPO00560 HLA-L-211ENST00000482052 1765 ntBASIC19.55■□□□□ 0.72
SDCBPO00560 GRK4-202ENST00000398051 2068 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SDCBPO00560 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
SDCBPO00560 RIPPLY2-202ENST00000369689 664 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
SDCBPO00560 KRT18P10-201ENST00000388836 1287 ntBASIC19.55■□□□□ 0.72
SDCBPO00560 HSD17B1P1-201ENST00000590052 955 ntBASIC19.55■□□□□ 0.72
SDCBPO00560 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
SDCBPO00560 RAD51-210ENST00000557850 1397 ntTSL 2 BASIC19.55■□□□□ 0.72
SDCBPO00560 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
SDCBPO00560 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 12.9 ms