Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 HSD17B4-215ENST00000510025 2589 ntTSL 2 BASIC14.43□□□□□ -0.16e-6■□□□□ 8.2
LIN28BQ6ZN17 HSD17B4-203ENST00000442060 2686 ntTSL 514.29□□□□□ -0.126e-6■□□□□ 8.2
LIN28BQ6ZN17 ACTN1-221ENST00000556571 568 ntTSL 413.86□□□□□ -0.196e-6■□□□□ 8.2
LIN28BQ6ZN17 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC13.6□□□□□ -0.236e-6■□□□□ 8.2
LIN28BQ6ZN17 HSD17B4-201ENST00000256216 2683 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.276e-6■□□□□ 8.2
LIN28BQ6ZN17 SLC39A14-207ENST00000518348 1086 ntTSL 213.13□□□□□ -0.316e-9■□□□□ 8.2
LIN28BQ6ZN17 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC12.75□□□□□ -0.376e-6■□□□□ 8.2
LIN28BQ6ZN17 CPVL-208ENST00000449801 528 ntTSL 412.44□□□□□ -0.426e-6■□□□□ 8.2
LIN28BQ6ZN17 SPTAN1-231ENST00000636337 100 ntTSL 511.78□□□□□ -0.526e-6■□□□□ 8.2
LIN28BQ6ZN17 ACTN1-208ENST00000553370 605 ntTSL 311.4□□□□□ -0.586e-6■□□□□ 8.2
LIN28BQ6ZN17 ACTN1-210ENST00000553779 530 ntTSL 411.4□□□□□ -0.586e-6■□□□□ 8.2
LIN28BQ6ZN17 ACTN1-215ENST00000555616 919 ntTSL 310.82□□□□□ -0.686e-6■□□□□ 8.2
LIN28BQ6ZN17 ACTN1-213ENST00000554508 585 ntTSL 49.87□□□□□ -0.836e-6■□□□□ 8.2
LIN28BQ6ZN17 ACTN1-212ENST00000554158 571 ntTSL 49.46□□□□□ -0.96e-6■□□□□ 8.2
LIN28BQ6ZN17 HSD17B4-221ENST00000515235 5540 ntTSL 28.73□□□□□ -1.016e-6■□□□□ 8.2
LIN28BQ6ZN17 HSD17B4-220ENST00000513628 2225 ntTSL 2 BASIC8.09□□□□□ -1.116e-6■□□□□ 8.2
LIN28BQ6ZN17 HSD17B4-227ENST00000522415 900 ntTSL 58.02□□□□□ -1.136e-6■□□□□ 8.2
LIN28BQ6ZN17 ADI1-202ENST00000382093 3870 ntTSL 2 BASIC7.46□□□□□ -1.226e-6■□□□□ 8.2
LIN28BQ6ZN17 HSD17B4-202ENST00000414835 2551 ntTSL 2 BASIC7.08□□□□□ -1.286e-6■□□□□ 8.2
LIN28BQ6ZN17 HSD17B4-212ENST00000509514 2314 ntTSL 1 (best) BASIC6.92□□□□□ -1.36e-6■□□□□ 8.2
LIN28BQ6ZN17 HSD17B4-213ENST00000509606 844 ntTSL 26.6□□□□□ -1.356e-6■□□□□ 8.2
LIN28BQ6ZN17 HSD17B4-214ENST00000509951 736 ntTSL 53.98□□□□□ -1.776e-6■□□□□ 8.2
LIN28BQ6ZN17 SPTAN1-232ENST00000636483 100 ntTSL 52.11□□□□□ -2.076e-6■□□□□ 8.2
LIN28BQ6ZN17 GNAS-232ENST00000476196 1839 ntTSL 211.49□□□□□ -0.573e-6■□□□□ 8.2
LIN28BQ6ZN17 GNAS-246ENST00000487981 581 ntTSL 511.36□□□□□ -0.593e-6■□□□□ 8.2
LIN28BQ6ZN17 GNAS-254ENST00000494081 557 ntTSL 58.73□□□□□ -1.013e-6■□□□□ 8.2
LIN28BQ6ZN17 GNAS-255ENST00000496934 2837 ntTSL 27.29□□□□□ -1.243e-6■□□□□ 8.2
LIN28BQ6ZN17 KDM3A-210ENST00000470160 2955 ntTSL 27.25□□□□□ -1.253e-10■□□□□ 8.2
LIN28BQ6ZN17 KDM3A-214ENST00000491383 4485 ntTSL 1 (best)4.74□□□□□ -1.653e-10■□□□□ 8.2
LIN28BQ6ZN17 MYL12A-210ENST00000583449 334 ntTSL 212.08□□□□□ -0.482e-14■□□□□ 8.2
LIN28BQ6ZN17 MYL12A-211ENST00000585090 614 ntTSL 311.91□□□□□ -0.52e-14■□□□□ 8.2
LIN28BQ6ZN17 SLC5A6-217ENST00000488743 3174 ntTSL 210.98□□□□□ -0.652e-7■□□□□ 8.2
LIN28BQ6ZN17 SLC5A6-201ENST00000310574 3231 ntAPPRIS P1 TSL 1 (best) BASIC10.7□□□□□ -0.72e-7■□□□□ 8.2
LIN28BQ6ZN17 CAT-202ENST00000525707 562 ntTSL 29.33□□□□□ -0.923e-6■□□□□ 8.2
LIN28BQ6ZN17 MYL6B-203ENST00000548571 223 ntTSL 49.95□□□□□ -0.824e-14■□□□□ 8.2
LIN28BQ6ZN17 HSP90B1-202ENST00000540297 590 ntTSL 322.25■■□□□ 1.151e-20■□□□□ 8.2
LIN28BQ6ZN17 HSP90B1-205ENST00000549334 581 ntTSL 419.7■□□□□ 0.741e-20■□□□□ 8.2
LIN28BQ6ZN17 SORT1-208ENST00000495777 391 ntTSL 210.2□□□□□ -0.781e-6■□□□□ 8.2
LIN28BQ6ZN17 SORT1-205ENST00000483508 759 ntTSL 38.6□□□□□ -1.031e-6■□□□□ 8.2
LIN28BQ6ZN17 TMEM50B-207ENST00000470682 364 ntTSL 53.61□□□□□ -1.832e-10■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-207ENST00000558007 469 ntTSL 219.05■□□□□ 0.642e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-211ENST00000558748 657 ntTSL 318.64■□□□□ 0.572e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC17.84■□□□□ 0.452e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-209ENST00000558483 857 ntTSL 317.31■□□□□ 0.362e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC16.2■□□□□ 0.182e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-204ENST00000420554 1864 ntTSL 1 (best) BASIC15.56■□□□□ 0.082e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-223ENST00000559836 1893 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.082e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-229ENST00000561038 2160 ntTSL 1 (best)15.17■□□□□ 0.022e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-206ENST00000557854 2025 ntTSL 1 (best) BASIC14.37□□□□□ -0.112e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-205ENST00000456667 1484 ntTSL 1 (best) BASIC14.3□□□□□ -0.122e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-224ENST00000559910 1562 ntTSL 5 BASIC14.21□□□□□ -0.142e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-201ENST00000348719 1684 ntTSL 5 BASIC14.2□□□□□ -0.142e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-218ENST00000559287 1748 ntTSL 1 (best)13.23□□□□□ -0.292e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-214ENST00000558865 735 ntTSL 512.71□□□□□ -0.372e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-202ENST00000355299 1972 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.432e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-225ENST00000559943 360 ntTSL 310.22□□□□□ -0.772e-7■□□□□ 8.2
LIN28BQ6ZN17 HSD17B11-205ENST00000508413 563 ntTSL 59.1□□□□□ -0.952e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-220ENST00000559479 573 ntTSL 38.79□□□□□ -12e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-203ENST00000399440 1652 ntAPPRIS P1 TSL 1 (best) BASIC8.6□□□□□ -1.032e-7■□□□□ 8.2
LIN28BQ6ZN17 GMPR2-215ENST00000558932 231 ntTSL 36.38□□□□□ -1.392e-7■□□□□ 8.2
LIN28BQ6ZN17 LMNB1-204ENST00000463908 557 ntTSL 420.97■□□□□ 0.956e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNB1-202ENST00000395354 1572 ntTSL 1 (best) BASIC20.61■□□□□ 0.896e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNA-211ENST00000470199 551 ntTSL 419.93■□□□□ 0.786e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNA-219ENST00000502751 570 ntTSL 418.74■□□□□ 0.596e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC18.39■□□□□ 0.536e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNA-223ENST00000515459 757 ntTSL 518.35■□□□□ 0.536e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC18.2■□□□□ 0.56e-6■□□□□ 8.1
LIN28BQ6ZN17 NET1-203ENST00000449083 637 ntTSL 517.73■□□□□ 0.436e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC17.69■□□□□ 0.426e-6■□□□□ 8.1
LIN28BQ6ZN17 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.326e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC17■□□□□ 0.316e-6■□□□□ 8.1
LIN28BQ6ZN17 GTF2A2-201ENST00000267869 518 ntTSL 316.36■□□□□ 0.216e-6■□□□□ 8.1
LIN28BQ6ZN17 GTF2A2-205ENST00000396064 633 ntTSL 3 BASIC16.3■□□□□ 0.26e-6■□□□□ 8.1
LIN28BQ6ZN17 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.186e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC15.6■□□□□ 0.096e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNB1-203ENST00000460265 3475 ntTSL 1 (best)15.29■□□□□ 0.046e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNA-210ENST00000469565 591 ntTSL 414.95□□□□□ -0.026e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.026e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNA-218ENST00000502357 537 ntTSL 414.89□□□□□ -0.036e-6■□□□□ 8.1
LIN28BQ6ZN17 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.096e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNA-220ENST00000504687 546 ntTSL 413.83□□□□□ -0.26e-6■□□□□ 8.1
LIN28BQ6ZN17 BCOR-208ENST00000413905 1945 ntTSL 513.56□□□□□ -0.246e-6■□□□□ 8.1
LIN28BQ6ZN17 MLF2-207ENST00000540710 458 ntTSL 313.41□□□□□ -0.266e-6■□□□□ 8.1
LIN28BQ6ZN17 GTF2A2-202ENST00000396060 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.426e-6■□□□□ 8.1
LIN28BQ6ZN17 NET1-201ENST00000355029 3402 ntTSL 1 (best) BASIC11.36□□□□□ -0.596e-6■□□□□ 8.1
LIN28BQ6ZN17 BCOR-204ENST00000378463 2230 ntTSL 5 BASIC11.36□□□□□ -0.596e-6■□□□□ 8.1
LIN28BQ6ZN17 NET1-202ENST00000380359 3253 ntAPPRIS P1 TSL 1 (best) BASIC10.36□□□□□ -0.756e-6■□□□□ 8.1
LIN28BQ6ZN17 BCOR-210ENST00000442018 2189 ntTSL 29.86□□□□□ -0.836e-6■□□□□ 8.1
LIN28BQ6ZN17 MORF4L1-222ENST00000560710 908 ntTSL 29.44□□□□□ -0.96e-6■□□□□ 8.1
LIN28BQ6ZN17 MED21-203ENST00000536711 578 ntTSL 49.11□□□□□ -0.956e-6■□□□□ 8.1
LIN28BQ6ZN17 HBS1L-214ENST00000529641 881 ntTSL 58.81□□□□□ -16e-6■□□□□ 8.1
LIN28BQ6ZN17 MED21-201ENST00000282892 1753 ntAPPRIS P1 TSL 1 (best) BASIC8.28□□□□□ -1.086e-6■□□□□ 8.1
LIN28BQ6ZN17 BCOR-209ENST00000427012 1969 ntTSL 58.1□□□□□ -1.116e-6■□□□□ 8.1
LIN28BQ6ZN17 HBS1L-213ENST00000529169 633 ntTSL 37.6□□□□□ -1.196e-6■□□□□ 8.1
LIN28BQ6ZN17 MED21-206ENST00000546323 575 ntTSL 3 BASIC7.12□□□□□ -1.276e-6■□□□□ 8.1
LIN28BQ6ZN17 MED21-204ENST00000538186 552 ntTSL 36.85□□□□□ -1.316e-6■□□□□ 8.1
LIN28BQ6ZN17 HBS1L-212ENST00000527578 2618 ntTSL 1 (best) BASIC6.45□□□□□ -1.386e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNB1-208ENST00000504788 1801 ntTSL 25.43□□□□□ -1.546e-6■□□□□ 8.1
LIN28BQ6ZN17 LMNB1-205ENST00000472034 730 ntTSL 35.27□□□□□ -1.576e-6■□□□□ 8.1
LIN28BQ6ZN17 SLC35F5-206ENST00000459683 744 ntTSL 25.24□□□□□ -1.576e-6■□□□□ 8.1
Retrieved 100 of 21,972 protein–RNA pairs in 65.9 ms