Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SHOX2O60902 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC15.58■□□□□ 0.08
SHOX2O60902 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC15.58■□□□□ 0.08
SHOX2O60902 XPO5-201ENST00000265351 5364 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SHOX2O60902 MX1-202ENST00000398598 2850 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
SHOX2O60902 STK32B-201ENST00000282908 3582 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHOX2O60902 UBTF-201ENST00000302904 4997 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
SHOX2O60902 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
SHOX2O60902 FFAR4-202ENST00000371483 3653 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SHOX2O60902 LRSAM1-204ENST00000373324 3044 ntTSL 2 BASIC15.57■□□□□ 0.08
SHOX2O60902 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHOX2O60902 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC15.57■□□□□ 0.08
SHOX2O60902 CBX6-201ENST00000216083 3191 ntAPPRIS ALT2 TSL 2 BASIC15.57■□□□□ 0.08
SHOX2O60902 B3GNTL1-211ENST00000576599 1787 ntTSL 2 BASIC15.57■□□□□ 0.08
SHOX2O60902 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHOX2O60902 VCAN-211ENST00000513984 1825 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SHOX2O60902 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
SHOX2O60902 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHOX2O60902 PYGM-202ENST00000377432 2611 ntTSL 2 BASIC15.57■□□□□ 0.08
SHOX2O60902 GOLGA2P9-201ENST00000596977 1937 ntBASIC15.57■□□□□ 0.08
SHOX2O60902 C7orf57-202ENST00000420324 1957 ntTSL 5 BASIC15.57■□□□□ 0.08
SHOX2O60902 MOGAT3-201ENST00000223114 2132 ntAPPRIS P2 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHOX2O60902 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC15.57■□□□□ 0.08
SHOX2O60902 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHOX2O60902 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC15.57■□□□□ 0.08
SHOX2O60902 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC15.57■□□□□ 0.08
SHOX2O60902 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC15.57■□□□□ 0.08
SHOX2O60902 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC15.57■□□□□ 0.08
SHOX2O60902 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SHOX2O60902 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC15.57■□□□□ 0.08
SHOX2O60902 AC012615.1-201ENST00000565797 1299 ntBASIC15.57■□□□□ 0.08
SHOX2O60902 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC15.57■□□□□ 0.08
SHOX2O60902 CTDNEP1-207ENST00000572043 857 ntTSL 3 BASIC15.57■□□□□ 0.08
SHOX2O60902 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC15.57■□□□□ 0.08
SHOX2O60902 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC15.57■□□□□ 0.08
SHOX2O60902 DBP-204ENST00000599385 709 ntTSL 3 BASIC15.57■□□□□ 0.08
SHOX2O60902 AL591684.3-201ENST00000605187 298 ntBASIC15.57■□□□□ 0.08
SHOX2O60902 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC15.57■□□□□ 0.08
SHOX2O60902 SERF2-217ENST00000630046 862 ntTSL 5 BASIC15.57■□□□□ 0.08
SHOX2O60902 AL358472.4-201ENST00000633140 710 ntBASIC15.57■□□□□ 0.08
SHOX2O60902 SCNN1A-215ENST00000540037 3040 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SHOX2O60902 PTENP1-202ENST00000532280 3996 ntBASIC15.57■□□□□ 0.08
SHOX2O60902 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC15.57■□□□□ 0.08
SHOX2O60902 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SHOX2O60902 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHOX2O60902 HEY1-202ENST00000354724 2293 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHOX2O60902 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHOX2O60902 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC15.57■□□□□ 0.08
SHOX2O60902 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHOX2O60902 PPM1E-201ENST00000308249 6542 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHOX2O60902 TP53I11-222ENST00000616990 3567 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
SHOX2O60902 CACNA2D4-220ENST00000585732 2566 ntTSL 5 BASIC15.57■□□□□ 0.08
SHOX2O60902 VPS26B-201ENST00000281187 3691 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHOX2O60902 NR4A2-209ENST00000426264 2642 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SHOX2O60902 GORASP1-201ENST00000319283 3722 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHOX2O60902 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHOX2O60902 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC15.57■□□□□ 0.08
SHOX2O60902 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SHOX2O60902 ATG3-202ENST00000402314 3010 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SHOX2O60902 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
SHOX2O60902 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SHOX2O60902 AC026992.2-202ENST00000565312 1934 ntTSL 5 BASIC15.56■□□□□ 0.08
SHOX2O60902 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHOX2O60902 ZNF239-203ENST00000426961 2027 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
SHOX2O60902 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHOX2O60902 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHOX2O60902 PGAP2-201ENST00000278243 2062 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SHOX2O60902 CDC45-205ENST00000437685 2072 ntTSL 2 BASIC15.56■□□□□ 0.08
SHOX2O60902 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHOX2O60902 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHOX2O60902 ATG9A-204ENST00000409422 2512 ntTSL 5 BASIC15.56■□□□□ 0.08
SHOX2O60902 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
SHOX2O60902 RBBP8NL-201ENST00000252998 2793 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
SHOX2O60902 CCDC57-203ENST00000392343 2896 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHOX2O60902 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHOX2O60902 KIFC3-204ENST00000465878 3225 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SHOX2O60902 FAM109A-201ENST00000361483 3256 ntAPPRIS ALT2 TSL 3 BASIC15.56■□□□□ 0.08
SHOX2O60902 ANKRD35-201ENST00000355594 3342 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
SHOX2O60902 ADCY8-202ENST00000377928 3363 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SHOX2O60902 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHOX2O60902 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SHOX2O60902 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHOX2O60902 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
SHOX2O60902 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC15.56■□□□□ 0.08
SHOX2O60902 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC15.56■□□□□ 0.08
SHOX2O60902 AC132008.2-207ENST00000454517 770 ntBASIC15.56■□□□□ 0.08
SHOX2O60902 MIR4515-201ENST00000584082 81 ntBASIC15.56■□□□□ 0.08
SHOX2O60902 NKAPP1-205ENST00000585790 367 ntBASIC15.56■□□□□ 0.08
SHOX2O60902 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
SHOX2O60902 AL450472.2-201ENST00000603663 1156 ntBASIC15.56■□□□□ 0.08
SHOX2O60902 FHL2-212ENST00000607522 759 ntTSL 2 BASIC15.56■□□□□ 0.08
SHOX2O60902 AC069148.1-201ENST00000608741 768 ntBASIC15.56■□□□□ 0.08
SHOX2O60902 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SHOX2O60902 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC15.56■□□□□ 0.08
SHOX2O60902 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHOX2O60902 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SHOX2O60902 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHOX2O60902 TBX10-201ENST00000335385 1548 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHOX2O60902 ERO1B-202ENST00000354619 4567 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SHOX2O60902 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC15.56■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 69.7 ms