Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 FKBP5-201ENST00000357266 3772 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 AL133267.1-201ENST00000398220 340 ntBASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 PPP6R2P1-201ENST00000450880 1275 ntBASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 HLA-J-203ENST00000494367 1087 ntBASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 DAD1-205ENST00000543337 501 ntTSL 3 BASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 WBP2-215ENST00000591399 2225 ntAPPRIS P2 TSL 5 BASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 COCH-203ENST00000460581 2688 ntTSL 2 BASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
LIMCH1Q9UPQ0 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LIMCH1Q9UPQ0 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LIMCH1Q9UPQ0 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC18.33■□□□□ 0.53
LIMCH1Q9UPQ0 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LIMCH1Q9UPQ0 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
LIMCH1Q9UPQ0 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
LIMCH1Q9UPQ0 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LIMCH1Q9UPQ0 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
LIMCH1Q9UPQ0 CAMK2D-207ENST00000505990 1802 ntTSL 5 BASIC18.33■□□□□ 0.53
LIMCH1Q9UPQ0 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.53
LIMCH1Q9UPQ0 DNAJC7-202ENST00000426588 1774 ntTSL 2 BASIC18.33■□□□□ 0.53
LIMCH1Q9UPQ0 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 HLA-V-204ENST00000476601 1289 ntBASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 AP000845.1-201ENST00000581677 2131 ntBASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 UBL5-208ENST00000593087 320 ntTSL 3 BASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 AC134684.3-201ENST00000641758 218 ntBASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 GRN-201ENST00000053867 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 WDR81-202ENST00000409644 6733 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC18.33■□□□□ 0.52
LIMCH1Q9UPQ0 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 REXO1L2P-201ENST00000425429 2069 ntBASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 CAPN7-201ENST00000253693 4353 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 AC015922.1-201ENST00000421102 1152 ntBASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 FAM8A3P-201ENST00000427218 844 ntBASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 AC092865.5-201ENST00000545435 363 ntBASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
LIMCH1Q9UPQ0 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC18.32■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms