Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
MKS1Q9NXB0 HTR3A-206ENST00000506841 2221 ntTSL 2 BASIC15.36■□□□□ 0.05
MKS1Q9NXB0 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
MKS1Q9NXB0 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
MKS1Q9NXB0 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC15.36■□□□□ 0.05
MKS1Q9NXB0 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC15.36■□□□□ 0.05
MKS1Q9NXB0 TBCE-202ENST00000406207 2012 ntAPPRIS P3 TSL 5 BASIC15.36■□□□□ 0.05
MKS1Q9NXB0 AC007787.1-201ENST00000588095 1583 ntBASIC15.36■□□□□ 0.05
MKS1Q9NXB0 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
MKS1Q9NXB0 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
MKS1Q9NXB0 AXL-202ENST00000359092 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
MKS1Q9NXB0 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 SLC25A21-AS1-201ENST00000556667 1924 ntBASIC15.35■□□□□ 0.05
MKS1Q9NXB0 CCR7-201ENST00000246657 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 ZNF256-201ENST00000282308 2172 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 NTRK2-205ENST00000376208 8178 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 CYP1A1-210ENST00000617691 2521 ntTSL 5 BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 AC074338.1-201ENST00000416825 156 ntBASIC15.35■□□□□ 0.05
MKS1Q9NXB0 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 USP40-206ENST00000443711 628 ntTSL 2 BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 LINC01250-201ENST00000457478 2344 ntTSL 2 BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 MCRS1-211ENST00000550165 1936 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 KLF4-201ENST00000374672 2813 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MKS1Q9NXB0 SLC32A1-201ENST00000217420 2574 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 FGF7P3-202ENST00000640245 1707 ntTSL 4 BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 SF1-209ENST00000433274 2317 ntTSL 2 BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 ZNF576-203ENST00000525771 2327 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 KCND3-201ENST00000302127 2659 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 LINC00924-202ENST00000556053 2682 ntTSL 2 BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 UMODL1-AS1-201ENST00000329015 2141 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 UXT-AS1-201ENST00000590504 1525 ntBASIC15.34■□□□□ 0.05
MKS1Q9NXB0 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 AC027601.5-201ENST00000624065 2482 ntBASIC15.34■□□□□ 0.05
MKS1Q9NXB0 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 TRIM46-202ENST00000368382 3127 ntTSL 2 BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 WARS2-202ENST00000369426 2811 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 AC022201.2-201ENST00000445084 287 ntTSL 5 BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 ACTG1P14-201ENST00000446382 1122 ntBASIC15.34■□□□□ 0.05
MKS1Q9NXB0 KRT18P3-201ENST00000451602 1288 ntBASIC15.34■□□□□ 0.05
MKS1Q9NXB0 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 AC140113.2-201ENST00000604370 208 ntBASIC15.34■□□□□ 0.05
MKS1Q9NXB0 AC027601.4-201ENST00000611259 610 ntBASIC15.34■□□□□ 0.05
MKS1Q9NXB0 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 IL9RP2-201ENST00000423948 1312 ntBASIC15.34■□□□□ 0.05
MKS1Q9NXB0 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 LPO-210ENST00000582328 2680 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 TK1-203ENST00000588734 1681 ntTSL 2 BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 INHBA-205ENST00000638023 2002 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 ZNF259P1-201ENST00000407656 1365 ntBASIC15.34■□□□□ 0.05
MKS1Q9NXB0 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
MKS1Q9NXB0 KRT8P12-202ENST00000472924 1397 ntBASIC15.34■□□□□ 0.05
MKS1Q9NXB0 AP001267.2-201ENST00000532619 2086 ntBASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms