Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 SPG21-203ENST00000433215 1613 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 AL031282.2-201ENST00000598846 5079 ntTSL 2 BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 ARHGEF16-201ENST00000378371 2219 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 ZNF180-202ENST00000391956 3049 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 MEIS3P1-201ENST00000495167 958 ntBASIC16.64■□□□□ 0.25
SIX2Q9NPC8 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 AC012508.2-201ENST00000567613 1472 ntBASIC16.64■□□□□ 0.25
SIX2Q9NPC8 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SIX2Q9NPC8 NOX3-201ENST00000159060 2042 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 ZNF485-201ENST00000361807 2054 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 VMA21-202ENST00000370361 693 ntTSL 5 BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 PKIG-203ENST00000372887 769 ntTSL 3 BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 AC135586.1-201ENST00000539323 574 ntBASIC16.63■□□□□ 0.25
SIX2Q9NPC8 TIMM17BP1-201ENST00000545713 516 ntBASIC16.63■□□□□ 0.25
SIX2Q9NPC8 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 ZNF334-202ENST00000457685 3487 ntTSL 2 BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 LINC00552-201ENST00000625151 2579 ntBASIC16.63■□□□□ 0.25
SIX2Q9NPC8 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 SPATS1-201ENST00000288390 1354 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
SIX2Q9NPC8 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 CICP14-201ENST00000629111 2732 ntBASIC16.62■□□□□ 0.25
SIX2Q9NPC8 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 DUS4L-201ENST00000265720 2220 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 GGT6-201ENST00000301395 2534 ntTSL 2 BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC16.62■□□□□ 0.25
SIX2Q9NPC8 STOM-203ENST00000538954 1257 ntTSL 5 BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms