Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AC006504.5-203ENST00000590628 1335 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 C1QBPP1-201ENST00000400117 770 ntBASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 LINC01220-201ENST00000558575 715 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 AC009486.1-201ENST00000569860 813 ntBASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 AC011489.1-202ENST00000586556 618 ntTSL 2 BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 AL022328.1-201ENST00000610050 478 ntBASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 MIR6775-201ENST00000617557 69 ntBASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
TRAIPQ9BWF2 MITF-204ENST00000352241 4814 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 SUN1-204ENST00000403868 978 ntTSL 2 BASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 SSR1P1-201ENST00000407630 814 ntBASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 VDAC1P7-201ENST00000462417 847 ntBASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 TDH-203ENST00000531764 1110 ntBASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 PTP4A1P2-201ENST00000546033 454 ntBASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 SNX29P1-201ENST00000548357 1007 ntBASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 BX927359.1-201ENST00000556073 543 ntTSL 2 BASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 CLUHP6-201ENST00000580789 941 ntBASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 AC012615.4-201ENST00000586694 607 ntTSL 4 BASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 GPX4-206ENST00000588919 803 ntTSL 2 BASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 AP005117.1-202ENST00000581724 1908 ntBASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 TANK-202ENST00000392749 2171 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 AC018892.3-201ENST00000623986 2499 ntBASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 F11R-206ENST00000621309 4770 ntTSL 5 BASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TRAIPQ9BWF2 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 MRPL49-201ENST00000279242 2019 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 LBX2-201ENST00000341396 886 ntTSL 3 BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 ACKR1-201ENST00000368121 1240 ntBASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 TEX30-203ENST00000376022 828 ntTSL 2 BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 BRF1-202ENST00000379932 884 ntTSL 5 BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 CROCCP4-201ENST00000457096 498 ntBASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 AC068587.3-201ENST00000526613 355 ntBASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 FLJ27354-203ENST00000526694 851 ntTSL 2 BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 TPD52L1-214ENST00000534199 811 ntTSL 2 BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 APRT-204ENST00000563655 709 ntTSL 5 BASIC17.04■□□□□ 0.32
TRAIPQ9BWF2 AP001063.1-201ENST00000568332 529 ntBASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms