Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
USP28Q96RU2 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC17.81■□□□□ 0.44
USP28Q96RU2 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC17.81■□□□□ 0.44
USP28Q96RU2 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC17.8■□□□□ 0.44
USP28Q96RU2 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC17.8■□□□□ 0.44
USP28Q96RU2 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP28Q96RU2 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC17.8■□□□□ 0.44
USP28Q96RU2 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC17.8■□□□□ 0.44
USP28Q96RU2 TK1-203ENST00000588734 1681 ntTSL 2 BASIC17.8■□□□□ 0.44
USP28Q96RU2 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP28Q96RU2 ROPN1-203ENST00000459660 1909 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
USP28Q96RU2 LIMK2-204ENST00000406516 2657 ntTSL 5 BASIC17.8■□□□□ 0.44
USP28Q96RU2 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC17.8■□□□□ 0.44
USP28Q96RU2 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
USP28Q96RU2 RPH3AL-202ENST00000331302 2606 ntAPPRIS P2 TSL 2 BASIC17.8■□□□□ 0.44
USP28Q96RU2 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
USP28Q96RU2 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP28Q96RU2 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
USP28Q96RU2 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP28Q96RU2 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC17.8■□□□□ 0.44
USP28Q96RU2 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC17.8■□□□□ 0.44
USP28Q96RU2 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC17.8■□□□□ 0.44
USP28Q96RU2 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC17.8■□□□□ 0.44
USP28Q96RU2 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
USP28Q96RU2 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP28Q96RU2 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC17.8■□□□□ 0.44
USP28Q96RU2 AL138828.2-201ENST00000615812 383 ntBASIC17.8■□□□□ 0.44
USP28Q96RU2 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP28Q96RU2 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP28Q96RU2 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP28Q96RU2 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC17.8■□□□□ 0.44
USP28Q96RU2 MSH5-203ENST00000375750 2775 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP28Q96RU2 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC17.8■□□□□ 0.44
USP28Q96RU2 LINC01107-201ENST00000446979 1975 ntTSL 2 BASIC17.8■□□□□ 0.44
USP28Q96RU2 DTX4-204ENST00000532982 1708 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
USP28Q96RU2 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC17.8■□□□□ 0.44
USP28Q96RU2 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC17.8■□□□□ 0.44
USP28Q96RU2 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC17.8■□□□□ 0.44
USP28Q96RU2 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP28Q96RU2 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC17.8■□□□□ 0.44
USP28Q96RU2 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP28Q96RU2 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
USP28Q96RU2 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
USP28Q96RU2 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP28Q96RU2 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
USP28Q96RU2 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC17.79■□□□□ 0.44
USP28Q96RU2 CYB561A3-203ENST00000447532 1803 ntTSL 5 BASIC17.79■□□□□ 0.44
USP28Q96RU2 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC17.79■□□□□ 0.44
USP28Q96RU2 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP28Q96RU2 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP28Q96RU2 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP28Q96RU2 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC17.79■□□□□ 0.44
USP28Q96RU2 AC007743.1-201ENST00000596663 3075 ntTSL 2 BASIC17.79■□□□□ 0.44
USP28Q96RU2 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP28Q96RU2 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC17.79■□□□□ 0.44
USP28Q96RU2 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP28Q96RU2 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP28Q96RU2 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP28Q96RU2 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP28Q96RU2 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC17.79■□□□□ 0.44
USP28Q96RU2 AC004967.1-201ENST00000453589 447 ntBASIC17.79■□□□□ 0.44
USP28Q96RU2 SERBP1P3-201ENST00000459980 809 ntBASIC17.79■□□□□ 0.44
USP28Q96RU2 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC17.79■□□□□ 0.44
USP28Q96RU2 HLA-V-204ENST00000476601 1289 ntBASIC17.79■□□□□ 0.44
USP28Q96RU2 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
USP28Q96RU2 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC17.79■□□□□ 0.44
USP28Q96RU2 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
USP28Q96RU2 VPS29-207ENST00000549970 818 ntTSL 3 BASIC17.79■□□□□ 0.44
USP28Q96RU2 AC010336.2-201ENST00000564226 506 ntBASIC17.79■□□□□ 0.44
USP28Q96RU2 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC17.79■□□□□ 0.44
USP28Q96RU2 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC17.79■□□□□ 0.44
USP28Q96RU2 AL359258.3-201ENST00000622910 2331 ntBASIC17.79■□□□□ 0.44
USP28Q96RU2 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP28Q96RU2 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC17.79■□□□□ 0.44
USP28Q96RU2 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC17.79■□□□□ 0.44
USP28Q96RU2 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP28Q96RU2 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
USP28Q96RU2 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
USP28Q96RU2 FAM160A2-203ENST00000524416 3327 ntTSL 2 BASIC17.79■□□□□ 0.44
USP28Q96RU2 AC232323.1-201ENST00000540724 2099 ntBASIC17.79■□□□□ 0.44
USP28Q96RU2 REXO1L5P-201ENST00000622260 2098 ntBASIC17.79■□□□□ 0.44
USP28Q96RU2 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP28Q96RU2 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
USP28Q96RU2 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC17.79■□□□□ 0.44
USP28Q96RU2 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC17.79■□□□□ 0.44
USP28Q96RU2 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC17.79■□□□□ 0.44
USP28Q96RU2 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
USP28Q96RU2 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP28Q96RU2 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP28Q96RU2 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC17.79■□□□□ 0.44
USP28Q96RU2 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
USP28Q96RU2 CICP14-201ENST00000629111 2732 ntBASIC17.78■□□□□ 0.44
USP28Q96RU2 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP28Q96RU2 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC17.78■□□□□ 0.44
USP28Q96RU2 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC17.78■□□□□ 0.44
USP28Q96RU2 PRF1-201ENST00000373209 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
USP28Q96RU2 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
USP28Q96RU2 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
USP28Q96RU2 CLUH-202ENST00000570628 5244 ntAPPRIS P2 TSL 2 BASIC17.78■□□□□ 0.44
USP28Q96RU2 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 642.9 ms