Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 BX284668.4-201ENST00000453917 508 ntBASIC19.17■□□□□ 0.66
SYNE4Q8N205 CENPBD1P1-203ENST00000479047 569 ntTSL 3 BASIC19.17■□□□□ 0.66
SYNE4Q8N205 ADM-202ENST00000524948 584 ntTSL 2 BASIC19.17■□□□□ 0.66
SYNE4Q8N205 LRRC37A6P-204ENST00000575554 573 ntTSL 3 BASIC19.17■□□□□ 0.66
SYNE4Q8N205 RN7SL48P-201ENST00000579283 293 ntBASIC19.17■□□□□ 0.66
SYNE4Q8N205 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
SYNE4Q8N205 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE4Q8N205 IFITM3-204ENST00000602735 713 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
SYNE4Q8N205 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC19.17■□□□□ 0.66
SYNE4Q8N205 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE4Q8N205 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE4Q8N205 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE4Q8N205 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
SYNE4Q8N205 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SYNE4Q8N205 AC092850.2-201ENST00000623821 2697 ntBASIC19.17■□□□□ 0.66
SYNE4Q8N205 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC19.16■□□□□ 0.66
SYNE4Q8N205 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE4Q8N205 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE4Q8N205 AL354989.2-201ENST00000435838 1540 ntBASIC19.16■□□□□ 0.66
SYNE4Q8N205 LRRC59-203ENST00000576448 1531 ntBASIC19.16■□□□□ 0.66
SYNE4Q8N205 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE4Q8N205 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SYNE4Q8N205 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SYNE4Q8N205 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE4Q8N205 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE4Q8N205 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE4Q8N205 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE4Q8N205 KRTAP10-13P-201ENST00000412914 571 ntBASIC19.16■□□□□ 0.66
SYNE4Q8N205 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC19.16■□□□□ 0.66
SYNE4Q8N205 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC19.16■□□□□ 0.66
SYNE4Q8N205 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE4Q8N205 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC19.16■□□□□ 0.66
SYNE4Q8N205 MTX1P1-201ENST00000440904 838 ntBASIC19.16■□□□□ 0.66
SYNE4Q8N205 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE4Q8N205 AC004066.1-201ENST00000502488 802 ntBASIC19.16■□□□□ 0.66
SYNE4Q8N205 AC104758.2-201ENST00000562716 483 ntTSL 3 BASIC19.16■□□□□ 0.66
SYNE4Q8N205 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC19.16■□□□□ 0.66
SYNE4Q8N205 ENPP7P14-201ENST00000621765 1040 ntBASIC19.16■□□□□ 0.66
SYNE4Q8N205 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC19.16■□□□□ 0.66
SYNE4Q8N205 TUBA8-202ENST00000330423 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE4Q8N205 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE4Q8N205 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE4Q8N205 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE4Q8N205 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC19.16■□□□□ 0.66
SYNE4Q8N205 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE4Q8N205 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
SYNE4Q8N205 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE4Q8N205 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE4Q8N205 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE4Q8N205 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC19.16■□□□□ 0.66
SYNE4Q8N205 MAGEA2-204ENST00000611674 1728 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SYNE4Q8N205 SMARCA4-215ENST00000590574 5282 ntAPPRIS ALT1 TSL 5 BASIC19.16■□□□□ 0.66
SYNE4Q8N205 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE4Q8N205 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC19.16■□□□□ 0.66
SYNE4Q8N205 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE4Q8N205 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE4Q8N205 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SYNE4Q8N205 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE4Q8N205 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE4Q8N205 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SYNE4Q8N205 AL359258.3-201ENST00000622910 2331 ntBASIC19.16■□□□□ 0.66
SYNE4Q8N205 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE4Q8N205 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE4Q8N205 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE4Q8N205 REXO1L5P-201ENST00000622260 2098 ntBASIC19.15■□□□□ 0.66
SYNE4Q8N205 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE4Q8N205 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE4Q8N205 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC19.15■□□□□ 0.66
SYNE4Q8N205 TDRKH-204ENST00000368825 2651 ntTSL 2 BASIC19.15■□□□□ 0.66
SYNE4Q8N205 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE4Q8N205 AL023775.1-201ENST00000454907 1746 ntBASIC19.15■□□□□ 0.66
SYNE4Q8N205 EIF4G3-214ENST00000634879 5325 ntTSL 5 BASIC19.15■□□□□ 0.66
SYNE4Q8N205 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE4Q8N205 C8orf74-201ENST00000304519 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE4Q8N205 LSM5-207ENST00000410044 687 ntTSL 3 BASIC19.15■□□□□ 0.66
SYNE4Q8N205 AL157392.1-201ENST00000412388 373 ntTSL 2 BASIC19.15■□□□□ 0.66
SYNE4Q8N205 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC19.15■□□□□ 0.66
SYNE4Q8N205 AL157392.3-216ENST00000437446 462 ntTSL 3 BASIC19.15■□□□□ 0.66
SYNE4Q8N205 REEP1-202ENST00000453231 940 ntTSL 2 BASIC19.15■□□□□ 0.66
SYNE4Q8N205 AC091804.1-201ENST00000486888 567 ntBASIC19.15■□□□□ 0.66
SYNE4Q8N205 AC092944.1-202ENST00000487238 483 ntTSL 4 BASIC19.15■□□□□ 0.66
SYNE4Q8N205 HIST2H2BC-201ENST00000498492 580 ntBASIC19.15■□□□□ 0.66
SYNE4Q8N205 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC19.15■□□□□ 0.66
SYNE4Q8N205 RNF41-210ENST00000552244 716 ntTSL 3 BASIC19.15■□□□□ 0.66
SYNE4Q8N205 AC105129.2-201ENST00000559536 390 ntBASIC19.15■□□□□ 0.66
SYNE4Q8N205 INO80C-210ENST00000590757 595 ntTSL 2 BASIC19.15■□□□□ 0.66
SYNE4Q8N205 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE4Q8N205 AC015967.2-201ENST00000624092 234 ntBASIC19.15■□□□□ 0.66
SYNE4Q8N205 AC006435.4-201ENST00000625037 234 ntBASIC19.15■□□□□ 0.66
SYNE4Q8N205 AL356737.1-201ENST00000634391 234 ntBASIC19.15■□□□□ 0.66
SYNE4Q8N205 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE4Q8N205 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC19.15■□□□□ 0.66
SYNE4Q8N205 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE4Q8N205 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC19.15■□□□□ 0.66
SYNE4Q8N205 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE4Q8N205 PCDHAC2-201ENST00000289269 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SYNE4Q8N205 KRT8P14-201ENST00000414254 1442 ntBASIC19.15■□□□□ 0.66
SYNE4Q8N205 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC19.15■□□□□ 0.66
SYNE4Q8N205 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC19.15■□□□□ 0.66
SYNE4Q8N205 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC19.15■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms