Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 PGAP2-209ENST00000464261 830 ntTSL 3 BASIC13.38□□□□□ -0.27
ABCA4P78363 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC13.38□□□□□ -0.27
ABCA4P78363 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC13.38□□□□□ -0.27
ABCA4P78363 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
ABCA4P78363 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC13.38□□□□□ -0.27
ABCA4P78363 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
ABCA4P78363 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
ABCA4P78363 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
ABCA4P78363 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
ABCA4P78363 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
ABCA4P78363 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
ABCA4P78363 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC13.38□□□□□ -0.27
ABCA4P78363 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC13.38□□□□□ -0.27
ABCA4P78363 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
ABCA4P78363 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
ABCA4P78363 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
ABCA4P78363 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC13.38□□□□□ -0.27
ABCA4P78363 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
ABCA4P78363 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
ABCA4P78363 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC13.38□□□□□ -0.27
ABCA4P78363 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
ABCA4P78363 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
ABCA4P78363 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC13.38□□□□□ -0.27
ABCA4P78363 SYNPO-201ENST00000307662 5374 ntAPPRIS P3 TSL 1 (best) BASIC13.38□□□□□ -0.27
ABCA4P78363 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC13.38□□□□□ -0.27
ABCA4P78363 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
ABCA4P78363 BEX5-201ENST00000333643 857 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
ABCA4P78363 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC13.38□□□□□ -0.27
ABCA4P78363 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
ABCA4P78363 AL662890.1-201ENST00000396818 632 ntBASIC13.38□□□□□ -0.27
ABCA4P78363 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC13.38□□□□□ -0.27
ABCA4P78363 LINC01762-204ENST00000434879 436 ntTSL 2 BASIC13.38□□□□□ -0.27
ABCA4P78363 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
ABCA4P78363 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC13.38□□□□□ -0.27
ABCA4P78363 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC13.38□□□□□ -0.27
ABCA4P78363 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
ABCA4P78363 GPX4-206ENST00000588919 803 ntTSL 2 BASIC13.38□□□□□ -0.27
ABCA4P78363 CYGB-203ENST00000589145 788 ntTSL 3 BASIC13.38□□□□□ -0.27
ABCA4P78363 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
ABCA4P78363 AC010491.1-201ENST00000563101 2797 ntBASIC13.38□□□□□ -0.27
ABCA4P78363 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
ABCA4P78363 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC13.38□□□□□ -0.27
ABCA4P78363 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
ABCA4P78363 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC13.38□□□□□ -0.27
ABCA4P78363 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ABCA4P78363 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
ABCA4P78363 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
ABCA4P78363 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC13.37□□□□□ -0.27
ABCA4P78363 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC13.37□□□□□ -0.27
ABCA4P78363 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
ABCA4P78363 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC13.37□□□□□ -0.27
ABCA4P78363 DMAC2-202ENST00000301183 1134 ntTSL 2 BASIC13.37□□□□□ -0.27
ABCA4P78363 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ABCA4P78363 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
ABCA4P78363 AC005077.2-201ENST00000449786 690 ntBASIC13.37□□□□□ -0.27
ABCA4P78363 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC13.37□□□□□ -0.27
ABCA4P78363 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC13.37□□□□□ -0.27
ABCA4P78363 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
ABCA4P78363 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
ABCA4P78363 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC13.37□□□□□ -0.27
ABCA4P78363 RPL28-208ENST00000559463 852 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ABCA4P78363 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC13.37□□□□□ -0.27
ABCA4P78363 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC13.37□□□□□ -0.27
ABCA4P78363 NDUFV2P1-201ENST00000596415 907 ntBASIC13.37□□□□□ -0.27
ABCA4P78363 ABBA01031663.1-201ENST00000635630 790 ntBASIC13.37□□□□□ -0.27
ABCA4P78363 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC13.37□□□□□ -0.27
ABCA4P78363 AD000864.1-201ENST00000624076 2295 ntBASIC13.37□□□□□ -0.27
ABCA4P78363 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
ABCA4P78363 AC008741.2-201ENST00000612792 3115 ntBASIC13.37□□□□□ -0.27
ABCA4P78363 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ABCA4P78363 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
ABCA4P78363 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
ABCA4P78363 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ABCA4P78363 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ABCA4P78363 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
ABCA4P78363 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
ABCA4P78363 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
ABCA4P78363 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ABCA4P78363 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
ABCA4P78363 AL161772.1-201ENST00000610494 4412 ntBASIC13.37□□□□□ -0.27
ABCA4P78363 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ABCA4P78363 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ABCA4P78363 SRD5A2-201ENST00000622030 4648 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ABCA4P78363 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC13.37□□□□□ -0.27
ABCA4P78363 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC13.37□□□□□ -0.27
ABCA4P78363 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC13.37□□□□□ -0.27
ABCA4P78363 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC13.37□□□□□ -0.27
ABCA4P78363 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC13.37□□□□□ -0.27
ABCA4P78363 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
ABCA4P78363 AC253536.4-201ENST00000440539 267 ntBASIC13.37□□□□□ -0.27
ABCA4P78363 TMEM198B-204ENST00000484016 896 ntBASIC13.37□□□□□ -0.27
ABCA4P78363 AC105129.2-201ENST00000559536 390 ntBASIC13.37□□□□□ -0.27
ABCA4P78363 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC13.37□□□□□ -0.27
ABCA4P78363 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC13.37□□□□□ -0.27
ABCA4P78363 UBXN1-218ENST00000616865 1002 ntTSL 5 BASIC13.37□□□□□ -0.27
ABCA4P78363 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC13.37□□□□□ -0.27
ABCA4P78363 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
ABCA4P78363 ST7L-202ENST00000358039 4528 ntTSL 1 (best) BASIC13.37□□□□□ -0.27
ABCA4P78363 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC13.37□□□□□ -0.27
ABCA4P78363 WAC-202ENST00000347934 2839 ntTSL 5 BASIC13.37□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms