Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC13.03□□□□□ -0.32
HOXA1P49639 RNPS1P1-201ENST00000507437 918 ntBASIC13.03□□□□□ -0.32
HOXA1P49639 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC13.03□□□□□ -0.32
HOXA1P49639 MIR3909-201ENST00000579518 119 ntBASIC13.03□□□□□ -0.32
HOXA1P49639 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC13.03□□□□□ -0.32
HOXA1P49639 CLEC4GP1-201ENST00000596555 870 ntBASIC13.03□□□□□ -0.32
HOXA1P49639 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
HOXA1P49639 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC13.03□□□□□ -0.32
HOXA1P49639 ACTL9-202ENST00000612068 1252 ntBASIC13.03□□□□□ -0.32
HOXA1P49639 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
HOXA1P49639 AC004790.2-201ENST00000623588 572 ntBASIC13.03□□□□□ -0.32
HOXA1P49639 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
HOXA1P49639 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
HOXA1P49639 C12orf43-202ENST00000445832 2397 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
HOXA1P49639 PPT1-213ENST00000641319 2388 ntBASIC13.03□□□□□ -0.32
HOXA1P49639 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
HOXA1P49639 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC13.03□□□□□ -0.32
HOXA1P49639 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC13.03□□□□□ -0.32
HOXA1P49639 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HOXA1P49639 MAD1L1-204ENST00000406869 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HOXA1P49639 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HOXA1P49639 UMODL1-206ENST00000408989 5262 ntAPPRIS P4 TSL 1 (best) BASIC13.03□□□□□ -0.32
HOXA1P49639 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HOXA1P49639 FOXP1-202ENST00000318789 7114 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
HOXA1P49639 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC13.03□□□□□ -0.32
HOXA1P49639 FOXP1-222ENST00000615603 7140 ntTSL 5 BASIC13.03□□□□□ -0.32
HOXA1P49639 SLC22A7-202ENST00000372585 2555 ntAPPRIS P4 TSL 5 BASIC13.03□□□□□ -0.32
HOXA1P49639 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HOXA1P49639 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
HOXA1P49639 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HOXA1P49639 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
HOXA1P49639 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HOXA1P49639 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
HOXA1P49639 C4B-201ENST00000425700 5237 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
HOXA1P49639 BEAN1-201ENST00000299694 2160 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
HOXA1P49639 DHX16-202ENST00000376442 3445 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HOXA1P49639 STAT4-202ENST00000392320 2822 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
HOXA1P49639 C15orf41-208ENST00000566621 2866 ntAPPRIS P3 TSL 5 BASIC13.03□□□□□ -0.32
HOXA1P49639 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC13.02□□□□□ -0.32
HOXA1P49639 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC13.02□□□□□ -0.32
HOXA1P49639 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
HOXA1P49639 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC13.02□□□□□ -0.32
HOXA1P49639 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC13.02□□□□□ -0.32
HOXA1P49639 SHROOM1-208ENST00000617339 3638 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
HOXA1P49639 SYBU-204ENST00000408908 2983 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
HOXA1P49639 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
HOXA1P49639 PLCB1-218ENST00000629992 3095 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
HOXA1P49639 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
HOXA1P49639 GPN2-202ENST00000374135 4678 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
HOXA1P49639 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.32
HOXA1P49639 FUK-201ENST00000288078 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
HOXA1P49639 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
HOXA1P49639 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
HOXA1P49639 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC13.02□□□□□ -0.33
HOXA1P49639 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HOXA1P49639 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC13.02□□□□□ -0.33
HOXA1P49639 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HOXA1P49639 RPS2P28-201ENST00000314255 741 ntBASIC13.02□□□□□ -0.33
HOXA1P49639 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC13.02□□□□□ -0.33
HOXA1P49639 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
HOXA1P49639 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC13.02□□□□□ -0.33
HOXA1P49639 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HOXA1P49639 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
HOXA1P49639 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC13.02□□□□□ -0.33
HOXA1P49639 CXCL1P1-201ENST00000502804 216 ntBASIC13.02□□□□□ -0.33
HOXA1P49639 SKP2-204ENST00000508514 821 ntTSL 3 BASIC13.02□□□□□ -0.33
HOXA1P49639 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC13.02□□□□□ -0.33
HOXA1P49639 TOLLIP-AS1-201ENST00000530897 939 ntBASIC13.02□□□□□ -0.33
HOXA1P49639 AP002469.2-201ENST00000531724 424 ntBASIC13.02□□□□□ -0.33
HOXA1P49639 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
HOXA1P49639 CIPC-205ENST00000555437 566 ntTSL 3 BASIC13.02□□□□□ -0.33
HOXA1P49639 AL031432.2-201ENST00000566714 459 ntBASIC13.02□□□□□ -0.33
HOXA1P49639 AL928711.1-201ENST00000570165 459 ntBASIC13.02□□□□□ -0.33
HOXA1P49639 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC13.02□□□□□ -0.33
HOXA1P49639 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.33
HOXA1P49639 AL645728.2-201ENST00000641974 660 ntBASIC13.02□□□□□ -0.33
HOXA1P49639 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HOXA1P49639 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
HOXA1P49639 AC136759.1-202ENST00000530858 2194 ntBASIC13.02□□□□□ -0.33
HOXA1P49639 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
HOXA1P49639 ARRB1-202ENST00000420843 3336 ntAPPRIS ALT1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HOXA1P49639 AP002414.3-201ENST00000589352 1468 ntBASIC13.02□□□□□ -0.33
HOXA1P49639 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC13.02□□□□□ -0.33
HOXA1P49639 KRBA2-202ENST00000396267 2562 ntTSL 2 BASIC13.02□□□□□ -0.33
HOXA1P49639 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
HOXA1P49639 SH3KBP1-205ENST00000397821 4731 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HOXA1P49639 CDH16-209ENST00000570262 2604 ntTSL 5 BASIC13.02□□□□□ -0.33
HOXA1P49639 DISC1-222ENST00000622252 6927 ntAPPRIS ALT2 TSL 5 BASIC13.02□□□□□ -0.33
HOXA1P49639 RNASEH2C-201ENST00000308418 2794 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HOXA1P49639 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC13.02□□□□□ -0.33
HOXA1P49639 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC13.02□□□□□ -0.33
HOXA1P49639 TMBIM7P-203ENST00000641617 1718 ntBASIC13.02□□□□□ -0.33
HOXA1P49639 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC13.02□□□□□ -0.33
HOXA1P49639 RNH1-224ENST00000534797 2973 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HOXA1P49639 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.33
HOXA1P49639 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC13.02□□□□□ -0.33
HOXA1P49639 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC13.02□□□□□ -0.33
HOXA1P49639 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC13.01□□□□□ -0.33
HOXA1P49639 SMARCA2-204ENST00000357248 5855 ntAPPRIS P1 TSL 5 BASIC13.01□□□□□ -0.33
HOXA1P49639 STARD8-202ENST00000374597 4820 ntAPPRIS P3 TSL 1 (best) BASIC13.01□□□□□ -0.33
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms