Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
MSH3P20585 OSM-203ENST00000403463 464 ntTSL 3 BASIC15.54■□□□□ 0.08
MSH3P20585 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
MSH3P20585 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
MSH3P20585 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC15.54■□□□□ 0.08
MSH3P20585 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC15.54■□□□□ 0.08
MSH3P20585 TMPRSS11CP-201ENST00000453277 683 ntBASIC15.54■□□□□ 0.08
MSH3P20585 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
MSH3P20585 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC15.54■□□□□ 0.08
MSH3P20585 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
MSH3P20585 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC15.54■□□□□ 0.08
MSH3P20585 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSH3P20585 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC15.54■□□□□ 0.08
MSH3P20585 AC023824.1-201ENST00000562945 2975 ntBASIC15.54■□□□□ 0.08
MSH3P20585 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSH3P20585 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSH3P20585 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC15.54■□□□□ 0.08
MSH3P20585 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
MSH3P20585 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC15.54■□□□□ 0.08
MSH3P20585 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC15.54■□□□□ 0.08
MSH3P20585 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSH3P20585 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC15.54■□□□□ 0.08
MSH3P20585 PPT1-215ENST00000641471 2368 ntBASIC15.54■□□□□ 0.08
MSH3P20585 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
MSH3P20585 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSH3P20585 AC013268.4-201ENST00000637413 2228 ntBASIC15.53■□□□□ 0.08
MSH3P20585 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC15.53■□□□□ 0.08
MSH3P20585 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
MSH3P20585 NID2-208ENST00000617139 3827 ntTSL 5 BASIC15.53■□□□□ 0.08
MSH3P20585 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
MSH3P20585 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC15.53■□□□□ 0.08
MSH3P20585 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
MSH3P20585 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
MSH3P20585 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC15.53■□□□□ 0.08
MSH3P20585 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
MSH3P20585 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC15.53■□□□□ 0.08
MSH3P20585 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
MSH3P20585 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
MSH3P20585 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC15.53■□□□□ 0.08
MSH3P20585 PKIG-203ENST00000372887 769 ntTSL 3 BASIC15.53■□□□□ 0.08
MSH3P20585 AC236430.1-201ENST00000402231 743 ntBASIC15.53■□□□□ 0.08
MSH3P20585 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC15.53■□□□□ 0.08
MSH3P20585 TOMM22P5-201ENST00000416399 439 ntBASIC15.53■□□□□ 0.08
MSH3P20585 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC15.53■□□□□ 0.08
MSH3P20585 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC15.53■□□□□ 0.08
MSH3P20585 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC15.53■□□□□ 0.08
MSH3P20585 AC002472.2-201ENST00000442739 958 ntBASIC15.53■□□□□ 0.08
MSH3P20585 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC15.53■□□□□ 0.08
MSH3P20585 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC15.53■□□□□ 0.08
MSH3P20585 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC15.53■□□□□ 0.08
MSH3P20585 AL589987.1-201ENST00000453380 819 ntBASIC15.53■□□□□ 0.08
MSH3P20585 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC15.53■□□□□ 0.08
MSH3P20585 TPRX2P-201ENST00000535362 881 ntBASIC15.53■□□□□ 0.08
MSH3P20585 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC15.53■□□□□ 0.08
MSH3P20585 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC15.53■□□□□ 0.08
MSH3P20585 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC15.53■□□□□ 0.08
MSH3P20585 RN7SL204P-201ENST00000582831 262 ntBASIC15.53■□□□□ 0.08
MSH3P20585 AC008761.3-201ENST00000624803 892 ntBASIC15.53■□□□□ 0.08
MSH3P20585 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
MSH3P20585 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
MSH3P20585 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.53■□□□□ 0.08
MSH3P20585 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
MSH3P20585 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC15.53■□□□□ 0.08
MSH3P20585 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
MSH3P20585 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
MSH3P20585 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
MSH3P20585 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
MSH3P20585 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
MSH3P20585 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
MSH3P20585 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
MSH3P20585 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.53■□□□□ 0.08
MSH3P20585 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.53■□□□□ 0.08
MSH3P20585 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
MSH3P20585 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.08
MSH3P20585 AC138969.3-201ENST00000546612 1459 ntBASIC15.52■□□□□ 0.08
MSH3P20585 AC138932.2-201ENST00000548268 1459 ntBASIC15.52■□□□□ 0.08
MSH3P20585 AC126755.4-201ENST00000549796 1459 ntBASIC15.52■□□□□ 0.08
MSH3P20585 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
MSH3P20585 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC15.52■□□□□ 0.08
MSH3P20585 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
MSH3P20585 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
MSH3P20585 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.52■□□□□ 0.08
MSH3P20585 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC15.52■□□□□ 0.08
MSH3P20585 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
MSH3P20585 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC15.52■□□□□ 0.08
MSH3P20585 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC15.52■□□□□ 0.08
MSH3P20585 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.52■□□□□ 0.08
MSH3P20585 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.52■□□□□ 0.08
MSH3P20585 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.52■□□□□ 0.08
MSH3P20585 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
MSH3P20585 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
MSH3P20585 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.52■□□□□ 0.08
MSH3P20585 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
MSH3P20585 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
MSH3P20585 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
MSH3P20585 GNAQP1-201ENST00000444815 1067 ntBASIC15.52■□□□□ 0.08
MSH3P20585 OARD1-208ENST00000469104 704 ntTSL 2 BASIC15.52■□□□□ 0.08
MSH3P20585 FTH1-202ENST00000526640 786 ntTSL 2 BASIC15.52■□□□□ 0.08
MSH3P20585 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC15.52■□□□□ 0.08
MSH3P20585 ARL16-202ENST00000570561 768 ntTSL 2 BASIC15.52■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms