Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 BPIFB4-201ENST00000375483 2159 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
SPTA1P02549 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SPTA1P02549 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
SPTA1P02549 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC14.05□□□□□ -0.16
SPTA1P02549 MPV17-205ENST00000402310 906 ntTSL 5 BASIC14.05□□□□□ -0.16
SPTA1P02549 CNN2P10-201ENST00000443067 918 ntBASIC14.05□□□□□ -0.16
SPTA1P02549 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC14.05□□□□□ -0.16
SPTA1P02549 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC14.05□□□□□ -0.16
SPTA1P02549 RN7SL774P-201ENST00000577467 290 ntBASIC14.05□□□□□ -0.16
SPTA1P02549 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC14.05□□□□□ -0.16
SPTA1P02549 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SPTA1P02549 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC14.05□□□□□ -0.16
SPTA1P02549 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC14.05□□□□□ -0.16
SPTA1P02549 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
SPTA1P02549 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
SPTA1P02549 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
SPTA1P02549 TIMP2-201ENST00000262768 3652 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SPTA1P02549 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SPTA1P02549 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SPTA1P02549 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
SPTA1P02549 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
SPTA1P02549 CNBP-208ENST00000504813 1549 ntAPPRIS ALT1 TSL 2 BASIC14.05□□□□□ -0.16
SPTA1P02549 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC14.05□□□□□ -0.16
SPTA1P02549 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SPTA1P02549 BCAS2-201ENST00000369541 1299 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SPTA1P02549 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC14.05□□□□□ -0.16
SPTA1P02549 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SPTA1P02549 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC14.05□□□□□ -0.16
SPTA1P02549 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC14.05□□□□□ -0.16
SPTA1P02549 TBCB-211ENST00000589996 724 ntTSL 3 BASIC14.05□□□□□ -0.16
SPTA1P02549 AL805961.1-203ENST00000641078 1258 ntBASIC14.05□□□□□ -0.16
SPTA1P02549 ELL-201ENST00000262809 4027 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SPTA1P02549 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC14.05□□□□□ -0.16
SPTA1P02549 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SPTA1P02549 TK1-203ENST00000588734 1681 ntTSL 2 BASIC14.05□□□□□ -0.16
SPTA1P02549 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SPTA1P02549 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
SPTA1P02549 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
SPTA1P02549 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
SPTA1P02549 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SPTA1P02549 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SPTA1P02549 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
SPTA1P02549 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SPTA1P02549 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC14.05□□□□□ -0.16
SPTA1P02549 C7orf33-201ENST00000307003 1354 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SPTA1P02549 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SPTA1P02549 RBCK1-202ENST00000356286 2774 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SPTA1P02549 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
SPTA1P02549 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
SPTA1P02549 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC14.04□□□□□ -0.16
SPTA1P02549 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SPTA1P02549 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SPTA1P02549 AC011676.5-201ENST00000624864 2660 ntBASIC14.04□□□□□ -0.16
SPTA1P02549 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SPTA1P02549 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
SPTA1P02549 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SPTA1P02549 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
SPTA1P02549 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
SPTA1P02549 KLF2P2-201ENST00000416807 1039 ntBASIC14.04□□□□□ -0.16
SPTA1P02549 AL354877.1-201ENST00000424412 413 ntBASIC14.04□□□□□ -0.16
SPTA1P02549 IMP3P2-201ENST00000489760 475 ntBASIC14.04□□□□□ -0.16
SPTA1P02549 CMC2-214ENST00000565925 640 ntTSL 5 BASIC14.04□□□□□ -0.16
SPTA1P02549 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC14.04□□□□□ -0.16
SPTA1P02549 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SPTA1P02549 AP000346.4-201ENST00000614827 381 ntBASIC14.04□□□□□ -0.16
SPTA1P02549 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
SPTA1P02549 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
SPTA1P02549 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SPTA1P02549 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SPTA1P02549 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
SPTA1P02549 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
SPTA1P02549 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
SPTA1P02549 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SPTA1P02549 OTUD7A-201ENST00000307050 10770 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SPTA1P02549 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC14.04□□□□□ -0.16
SPTA1P02549 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SPTA1P02549 TSC2-207ENST00000439673 5287 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
SPTA1P02549 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
SPTA1P02549 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SPTA1P02549 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC14.04□□□□□ -0.16
SPTA1P02549 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SPTA1P02549 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SPTA1P02549 NME2-204ENST00000503064 749 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SPTA1P02549 RCE1-204ENST00000525356 1270 ntTSL 5 BASIC14.04□□□□□ -0.16
SPTA1P02549 CLNS1A-211ENST00000532069 898 ntTSL 3 BASIC14.04□□□□□ -0.16
SPTA1P02549 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC14.04□□□□□ -0.16
SPTA1P02549 RNF41-210ENST00000552244 716 ntTSL 3 BASIC14.04□□□□□ -0.16
SPTA1P02549 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC14.04□□□□□ -0.16
SPTA1P02549 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SPTA1P02549 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC14.04□□□□□ -0.16
SPTA1P02549 NPM1P43-201ENST00000558669 786 ntBASIC14.04□□□□□ -0.16
SPTA1P02549 CDK7-214ENST00000626796 358 ntTSL 5 BASIC14.04□□□□□ -0.16
SPTA1P02549 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC14.04□□□□□ -0.16
SPTA1P02549 ATP6AP2-211ENST00000636196 1403 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
SPTA1P02549 AC141586.5-201ENST00000624546 2050 ntBASIC14.04□□□□□ -0.16
SPTA1P02549 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SPTA1P02549 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
SPTA1P02549 ALCAM-201ENST00000306107 4701 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
SPTA1P02549 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
SPTA1P02549 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 71.2 ms