Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS4BO75351 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS4BO75351 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC15.34■□□□□ 0.05
VPS4BO75351 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC15.34■□□□□ 0.05
VPS4BO75351 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC15.34■□□□□ 0.05
VPS4BO75351 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC15.34■□□□□ 0.05
VPS4BO75351 AL132711.1-201ENST00000557546 722 ntTSL 3 BASIC15.34■□□□□ 0.05
VPS4BO75351 AL138918.1-201ENST00000568306 659 ntBASIC15.34■□□□□ 0.05
VPS4BO75351 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC15.34■□□□□ 0.05
VPS4BO75351 AL662799.1-202ENST00000614205 422 ntBASIC15.34■□□□□ 0.05
VPS4BO75351 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC15.34■□□□□ 0.05
VPS4BO75351 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC15.34■□□□□ 0.05
VPS4BO75351 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.34■□□□□ 0.05
VPS4BO75351 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS4BO75351 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VPS4BO75351 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC15.34■□□□□ 0.05
VPS4BO75351 OR2I1P-210ENST00000642037 4691 ntBASIC15.34■□□□□ 0.05
VPS4BO75351 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.33■□□□□ 0.05
VPS4BO75351 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
VPS4BO75351 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.33■□□□□ 0.05
VPS4BO75351 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
VPS4BO75351 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
VPS4BO75351 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
VPS4BO75351 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.05
VPS4BO75351 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC15.33■□□□□ 0.05
VPS4BO75351 AL161772.1-201ENST00000610494 4412 ntBASIC15.33■□□□□ 0.04
VPS4BO75351 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS4BO75351 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC15.33■□□□□ 0.04
VPS4BO75351 AGAP7P-201ENST00000582299 2062 ntBASIC15.33■□□□□ 0.04
VPS4BO75351 AGAP14-201ENST00000624701 2060 ntBASIC15.33■□□□□ 0.04
VPS4BO75351 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS4BO75351 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
VPS4BO75351 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS4BO75351 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC15.33■□□□□ 0.04
VPS4BO75351 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC15.33■□□□□ 0.04
VPS4BO75351 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC15.33■□□□□ 0.04
VPS4BO75351 CD164L2-203ENST00000374030 993 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.04
VPS4BO75351 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS4BO75351 PP14571-201ENST00000404327 934 ntTSL 2 BASIC15.33■□□□□ 0.04
VPS4BO75351 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC15.33■□□□□ 0.04
VPS4BO75351 AC241585.1-201ENST00000433527 519 ntBASIC15.33■□□□□ 0.04
VPS4BO75351 ATP5G2P4-201ENST00000442175 420 ntBASIC15.33■□□□□ 0.04
VPS4BO75351 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
VPS4BO75351 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC15.33■□□□□ 0.04
VPS4BO75351 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC15.33■□□□□ 0.04
VPS4BO75351 AL596325.1-201ENST00000563991 1082 ntBASIC15.33■□□□□ 0.04
VPS4BO75351 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC15.33■□□□□ 0.04
VPS4BO75351 RAB34-224ENST00000636513 888 ntTSL 5 BASIC15.33■□□□□ 0.04
VPS4BO75351 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC15.33■□□□□ 0.04
VPS4BO75351 MAST1-201ENST00000251472 4833 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS4BO75351 AC148477.4-201ENST00000613430 1793 ntBASIC15.33■□□□□ 0.04
VPS4BO75351 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS4BO75351 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC15.33■□□□□ 0.04
VPS4BO75351 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS4BO75351 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VPS4BO75351 LINC02228-204ENST00000642115 2962 ntBASIC15.33■□□□□ 0.04
VPS4BO75351 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC15.33■□□□□ 0.04
VPS4BO75351 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4BO75351 MARS-233ENST00000628866 2583 ntTSL 5 BASIC15.32■□□□□ 0.04
VPS4BO75351 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4BO75351 MROH4P-201ENST00000431302 1578 ntBASIC15.32■□□□□ 0.04
VPS4BO75351 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC15.32■□□□□ 0.04
VPS4BO75351 GOLGA8DP-202ENST00000341390 2184 ntBASIC15.32■□□□□ 0.04
VPS4BO75351 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4BO75351 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4BO75351 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC15.32■□□□□ 0.04
VPS4BO75351 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4BO75351 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC15.32■□□□□ 0.04
VPS4BO75351 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4BO75351 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4BO75351 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC15.32■□□□□ 0.04
VPS4BO75351 AC009090.5-201ENST00000624886 2285 ntBASIC15.32■□□□□ 0.04
VPS4BO75351 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4BO75351 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC15.32■□□□□ 0.04
VPS4BO75351 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC15.32■□□□□ 0.04
VPS4BO75351 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4BO75351 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4BO75351 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4BO75351 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4BO75351 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4BO75351 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4BO75351 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4BO75351 PHKG1P2-201ENST00000457537 863 ntBASIC15.32■□□□□ 0.04
VPS4BO75351 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC15.32■□□□□ 0.04
VPS4BO75351 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4BO75351 RBAKDN-201ENST00000498308 514 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4BO75351 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.32■□□□□ 0.04
VPS4BO75351 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC15.32■□□□□ 0.04
VPS4BO75351 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.32■□□□□ 0.04
VPS4BO75351 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC15.32■□□□□ 0.04
VPS4BO75351 AC008267.7-201ENST00000624570 1194 ntBASIC15.32■□□□□ 0.04
VPS4BO75351 PPL-205ENST00000590782 5845 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
VPS4BO75351 CLCN2-201ENST00000265593 3290 ntAPPRIS P3 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4BO75351 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4BO75351 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.32■□□□□ 0.04
VPS4BO75351 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC15.32■□□□□ 0.04
VPS4BO75351 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC15.32■□□□□ 0.04
VPS4BO75351 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
VPS4BO75351 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VPS4BO75351 MEOX1-202ENST00000329168 2129 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 56.1 ms