Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
SCN4AP35499 PRKAB1-210ENST00000630317 258 ntTSL 2 BASIC17.91■□□□□ 0.46
SCN4AP35499 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC17.91■□□□□ 0.46
SCN4AP35499 AP001094.4-201ENST00000579008 2176 ntBASIC17.91■□□□□ 0.46
SCN4AP35499 AC124067.4-201ENST00000519691 2379 ntBASIC17.91■□□□□ 0.46
SCN4AP35499 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SCN4AP35499 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SCN4AP35499 ACRBP-201ENST00000229243 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SCN4AP35499 PPP1R1B-202ENST00000394265 1419 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SCN4AP35499 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SCN4AP35499 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.9■□□□□ 0.46
SCN4AP35499 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC17.9■□□□□ 0.46
SCN4AP35499 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
SCN4AP35499 NHP2-202ENST00000314397 599 ntTSL 2 BASIC17.9■□□□□ 0.46
SCN4AP35499 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SCN4AP35499 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC17.9■□□□□ 0.46
SCN4AP35499 BCAS2P2-201ENST00000425064 674 ntBASIC17.9■□□□□ 0.46
SCN4AP35499 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC17.9■□□□□ 0.46
SCN4AP35499 PGAP2-212ENST00000464906 1259 ntTSL 2 BASIC17.9■□□□□ 0.46
SCN4AP35499 AC012158.2-201ENST00000536546 354 ntBASIC17.9■□□□□ 0.46
SCN4AP35499 AC008825.2-201ENST00000603374 718 ntBASIC17.9■□□□□ 0.46
SCN4AP35499 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SCN4AP35499 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
SCN4AP35499 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SCN4AP35499 AC136759.1-202ENST00000530858 2194 ntBASIC17.9■□□□□ 0.46
SCN4AP35499 CSF3-201ENST00000225474 1509 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
SCN4AP35499 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC17.9■□□□□ 0.46
SCN4AP35499 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC17.9■□□□□ 0.46
SCN4AP35499 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC17.9■□□□□ 0.46
SCN4AP35499 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC17.9■□□□□ 0.46
SCN4AP35499 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SCN4AP35499 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
SCN4AP35499 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
SCN4AP35499 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC17.89■□□□□ 0.46
SCN4AP35499 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
SCN4AP35499 LRP3-201ENST00000253193 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.46
SCN4AP35499 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SCN4AP35499 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SCN4AP35499 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
SCN4AP35499 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
SCN4AP35499 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
SCN4AP35499 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC17.89■□□□□ 0.45
SCN4AP35499 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC17.89■□□□□ 0.45
SCN4AP35499 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SCN4AP35499 AL139241.1-201ENST00000433374 1168 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SCN4AP35499 ALG3P1-201ENST00000508806 1114 ntBASIC17.89■□□□□ 0.45
SCN4AP35499 TMEM223-202ENST00000525631 736 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SCN4AP35499 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SCN4AP35499 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
SCN4AP35499 NR2C2AP-207ENST00000544883 899 ntTSL 2 BASIC17.89■□□□□ 0.45
SCN4AP35499 MIR4472-1-201ENST00000584349 80 ntBASIC17.89■□□□□ 0.45
SCN4AP35499 AC073592.2-201ENST00000623062 780 ntBASIC17.89■□□□□ 0.45
SCN4AP35499 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SCN4AP35499 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC17.89■□□□□ 0.45
SCN4AP35499 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SCN4AP35499 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SCN4AP35499 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SCN4AP35499 LRP10-203ENST00000546834 1780 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
SCN4AP35499 LINC01815-202ENST00000641468 1409 ntBASIC17.89■□□□□ 0.45
SCN4AP35499 SPATA21-201ENST00000335496 2015 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
SCN4AP35499 IL9RP3-201ENST00000442856 1674 ntBASIC17.89■□□□□ 0.45
SCN4AP35499 FBXO16-202ENST00000380254 1343 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
SCN4AP35499 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC17.89■□□□□ 0.45
SCN4AP35499 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SCN4AP35499 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC17.89■□□□□ 0.45
SCN4AP35499 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
SCN4AP35499 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
SCN4AP35499 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC17.89■□□□□ 0.45
SCN4AP35499 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC17.89■□□□□ 0.45
SCN4AP35499 PEF1-201ENST00000373703 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SCN4AP35499 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
SCN4AP35499 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC17.89■□□□□ 0.45
SCN4AP35499 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.89■□□□□ 0.45
SCN4AP35499 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
SCN4AP35499 MBP-201ENST00000354542 575 ntTSL 2 BASIC17.88■□□□□ 0.45
SCN4AP35499 PCBP3-201ENST00000400304 1086 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
SCN4AP35499 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC17.88■□□□□ 0.45
SCN4AP35499 AC114763.1-201ENST00000431985 928 ntTSL 2 BASIC17.88■□□□□ 0.45
SCN4AP35499 PCBP3-208ENST00000449640 1278 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
SCN4AP35499 SNHG14-206ENST00000450809 677 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SCN4AP35499 DMKN-256ENST00000492341 738 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
SCN4AP35499 SNCB-203ENST00000506696 552 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
SCN4AP35499 AC011481.2-201ENST00000585408 426 ntTSL 3 BASIC17.88■□□□□ 0.45
SCN4AP35499 AC009884.2-201ENST00000603110 324 ntBASIC17.88■□□□□ 0.45
SCN4AP35499 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SCN4AP35499 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC17.88■□□□□ 0.45
SCN4AP35499 LUC7L3-201ENST00000240304 1972 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
SCN4AP35499 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC17.88■□□□□ 0.45
SCN4AP35499 AL138725.1-201ENST00000407347 1314 ntBASIC17.88■□□□□ 0.45
SCN4AP35499 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.88■□□□□ 0.45
SCN4AP35499 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SCN4AP35499 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SCN4AP35499 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SCN4AP35499 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
SCN4AP35499 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC17.88■□□□□ 0.45
SCN4AP35499 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SCN4AP35499 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SCN4AP35499 RNA5SP359-201ENST00000364838 113 ntBASIC17.88■□□□□ 0.45
SCN4AP35499 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SCN4AP35499 SPIN2B-203ENST00000374910 725 ntTSL 3 BASIC17.88■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms