Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
MSH3P20585 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.56■□□□□ 0.08
MSH3P20585 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
MSH3P20585 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MSH3P20585 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
MSH3P20585 XAGE1A-203ENST00000375602 614 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MSH3P20585 XAGE1B-203ENST00000375616 614 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MSH3P20585 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
MSH3P20585 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MSH3P20585 KRT18P64-201ENST00000434946 1219 ntBASIC15.56■□□□□ 0.08
MSH3P20585 FAM207CP-201ENST00000443486 507 ntBASIC15.56■□□□□ 0.08
MSH3P20585 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC15.56■□□□□ 0.08
MSH3P20585 MEIS3P1-201ENST00000495167 958 ntBASIC15.56■□□□□ 0.08
MSH3P20585 SPDYE18-201ENST00000510091 1050 ntBASIC15.56■□□□□ 0.08
MSH3P20585 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC15.56■□□□□ 0.08
MSH3P20585 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
MSH3P20585 AC092337.1-201ENST00000568699 1129 ntBASIC15.56■□□□□ 0.08
MSH3P20585 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC15.56■□□□□ 0.08
MSH3P20585 AC092364.2-202ENST00000597012 1073 ntBASIC15.56■□□□□ 0.08
MSH3P20585 HFE2-206ENST00000634927 506 ntTSL 4 BASIC15.56■□□□□ 0.08
MSH3P20585 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
MSH3P20585 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
MSH3P20585 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC15.56■□□□□ 0.08
MSH3P20585 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC15.56■□□□□ 0.08
MSH3P20585 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC15.56■□□□□ 0.08
MSH3P20585 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
MSH3P20585 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
MSH3P20585 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
MSH3P20585 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC15.56■□□□□ 0.08
MSH3P20585 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC15.56■□□□□ 0.08
MSH3P20585 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MSH3P20585 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.56■□□□□ 0.08
MSH3P20585 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC15.56■□□□□ 0.08
MSH3P20585 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC15.56■□□□□ 0.08
MSH3P20585 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
MSH3P20585 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC15.56■□□□□ 0.08
MSH3P20585 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
MSH3P20585 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
MSH3P20585 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC15.56■□□□□ 0.08
MSH3P20585 DCAF17-202ENST00000375255 5828 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
MSH3P20585 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
MSH3P20585 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
MSH3P20585 RASA4B-202ENST00000465829 2931 ntAPPRIS ALT1 TSL 1 (best) BASIC15.55■□□□□ 0.08
MSH3P20585 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC15.55■□□□□ 0.08
MSH3P20585 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
MSH3P20585 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
MSH3P20585 SSR4P1-203ENST00000599569 2260 ntBASIC15.55■□□□□ 0.08
MSH3P20585 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC15.55■□□□□ 0.08
MSH3P20585 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
MSH3P20585 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC15.55■□□□□ 0.08
MSH3P20585 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
MSH3P20585 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
MSH3P20585 TDG-209ENST00000544861 1387 ntTSL 2 BASIC15.55■□□□□ 0.08
MSH3P20585 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
MSH3P20585 SPDYE19P-201ENST00000338590 713 ntBASIC15.55■□□□□ 0.08
MSH3P20585 ADM2-201ENST00000395737 535 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
MSH3P20585 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC15.55■□□□□ 0.08
MSH3P20585 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
MSH3P20585 SERBP1P5-201ENST00000510079 1181 ntBASIC15.55■□□□□ 0.08
MSH3P20585 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC15.55■□□□□ 0.08
MSH3P20585 OIP5-AS1-209ENST00000561226 775 ntTSL 3 BASIC15.55■□□□□ 0.08
MSH3P20585 LINC02560-201ENST00000596379 459 ntBASIC15.55■□□□□ 0.08
MSH3P20585 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC15.55■□□□□ 0.08
MSH3P20585 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC15.55■□□□□ 0.08
MSH3P20585 AC004233.3-201ENST00000607794 1269 ntBASIC15.55■□□□□ 0.08
MSH3P20585 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC15.55■□□□□ 0.08
MSH3P20585 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC15.55■□□□□ 0.08
MSH3P20585 AC073347.1-201ENST00000421633 2643 ntBASIC15.55■□□□□ 0.08
MSH3P20585 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
MSH3P20585 HNF1B-207ENST00000621123 1971 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
MSH3P20585 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
MSH3P20585 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSH3P20585 AC127383.1-201ENST00000444697 1800 ntBASIC15.54■□□□□ 0.08
MSH3P20585 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
MSH3P20585 AC006058.4-201ENST00000624016 1670 ntBASIC15.54■□□□□ 0.08
MSH3P20585 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC15.54■□□□□ 0.08
MSH3P20585 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSH3P20585 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSH3P20585 CDSN-202ENST00000376288 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSH3P20585 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
MSH3P20585 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
MSH3P20585 DEK-201ENST00000244776 1441 ntTSL 2 BASIC15.54■□□□□ 0.08
MSH3P20585 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
MSH3P20585 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC15.54■□□□□ 0.08
MSH3P20585 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSH3P20585 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSH3P20585 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSH3P20585 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
MSH3P20585 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
MSH3P20585 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSH3P20585 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
MSH3P20585 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC15.54■□□□□ 0.08
MSH3P20585 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC15.54■□□□□ 0.08
MSH3P20585 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC15.54■□□□□ 0.08
MSH3P20585 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC15.54■□□□□ 0.08
MSH3P20585 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC15.54■□□□□ 0.08
MSH3P20585 NPM2-201ENST00000289820 1100 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSH3P20585 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSH3P20585 LCE1E-201ENST00000368770 1180 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
MSH3P20585 LCK-206ENST00000373564 2137 ntTSL 5 BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms