Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TNFP01375 PTPN21-201ENST00000328736 6089 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TNFP01375 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
TNFP01375 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC15.16■□□□□ 0.02
TNFP01375 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
TNFP01375 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TNFP01375 AC084364.1-201ENST00000551967 1556 ntBASIC15.16■□□□□ 0.02
TNFP01375 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
TNFP01375 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TNFP01375 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC15.16■□□□□ 0.02
TNFP01375 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TNFP01375 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TNFP01375 IFITM3-201ENST00000399808 808 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
TNFP01375 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC15.16■□□□□ 0.02
TNFP01375 PRAP1-201ENST00000433452 971 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
TNFP01375 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC15.16■□□□□ 0.02
TNFP01375 CSF2RBP1-201ENST00000447905 391 ntBASIC15.16■□□□□ 0.02
TNFP01375 AC114812.1-204ENST00000449669 728 ntBASIC15.16■□□□□ 0.02
TNFP01375 FO681548.1-201ENST00000455617 1132 ntBASIC15.16■□□□□ 0.02
TNFP01375 AC004066.1-201ENST00000502488 802 ntBASIC15.16■□□□□ 0.02
TNFP01375 MFF-223ENST00000524634 647 ntTSL 2 BASIC15.16■□□□□ 0.02
TNFP01375 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC15.16■□□□□ 0.02
TNFP01375 AC244669.2-201ENST00000612320 853 ntBASIC15.16■□□□□ 0.02
TNFP01375 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.16■□□□□ 0.02
TNFP01375 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC15.16■□□□□ 0.02
TNFP01375 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TNFP01375 CASP2-201ENST00000310447 4225 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TNFP01375 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TNFP01375 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC15.16■□□□□ 0.02
TNFP01375 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TNFP01375 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
TNFP01375 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
TNFP01375 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC15.16■□□□□ 0.02
TNFP01375 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TNFP01375 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
TNFP01375 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TNFP01375 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TNFP01375 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
TNFP01375 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TNFP01375 ASIC1-201ENST00000228468 4072 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TNFP01375 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TNFP01375 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TNFP01375 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.15■□□□□ 0.02
TNFP01375 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC15.15■□□□□ 0.02
TNFP01375 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
TNFP01375 WAC-202ENST00000347934 2839 ntTSL 5 BASIC15.15■□□□□ 0.02
TNFP01375 AMT-224ENST00000635808 1610 ntTSL 5 BASIC15.15■□□□□ 0.02
TNFP01375 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
TNFP01375 ZNRD1-201ENST00000332435 864 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TNFP01375 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
TNFP01375 RPF1-202ENST00000370656 724 ntTSL 2 BASIC15.15■□□□□ 0.02
TNFP01375 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TNFP01375 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
TNFP01375 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
TNFP01375 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
TNFP01375 AL121983.1-201ENST00000424181 335 ntTSL 2 BASIC15.15■□□□□ 0.02
TNFP01375 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TNFP01375 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC15.15■□□□□ 0.02
TNFP01375 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
TNFP01375 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC15.15■□□□□ 0.02
TNFP01375 RPL8-205ENST00000527914 551 ntTSL 3 BASIC15.15■□□□□ 0.02
TNFP01375 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC15.15■□□□□ 0.02
TNFP01375 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC15.15■□□□□ 0.02
TNFP01375 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC15.15■□□□□ 0.02
TNFP01375 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC15.15■□□□□ 0.02
TNFP01375 RHOXF1P1-202ENST00000635473 501 ntBASIC15.15■□□□□ 0.02
TNFP01375 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TNFP01375 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC15.15■□□□□ 0.02
TNFP01375 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC15.15■□□□□ 0.02
TNFP01375 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
TNFP01375 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TNFP01375 ELP6-201ENST00000296149 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TNFP01375 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC15.15■□□□□ 0.02
TNFP01375 LINC00094-204ENST00000599836 1689 ntAPPRIS P5 BASIC15.15■□□□□ 0.02
TNFP01375 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
TNFP01375 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TNFP01375 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC15.15■□□□□ 0.02
TNFP01375 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
TNFP01375 CD83-201ENST00000379153 2471 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
TNFP01375 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC15.15■□□□□ 0.02
TNFP01375 PITPNC1-203ENST00000580974 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
TNFP01375 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 LINC02495-201ENST00000508601 4167 ntTSL 2 BASIC15.14■□□□□ 0.01
TNFP01375 RB1CC1-201ENST00000025008 6635 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 AIDA-201ENST00000340020 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
TNFP01375 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
TNFP01375 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
TNFP01375 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC15.14■□□□□ 0.01
TNFP01375 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC15.14■□□□□ 0.01
TNFP01375 PAFAH1B1-202ENST00000397195 5497 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
TNFP01375 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 58 ms