Protein–RNA interactions for Protein: Q9Y4P1

ATG4B, Cysteine protease ATG4B, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4BQ9Y4P1 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
ATG4BQ9Y4P1 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 AMT-224ENST00000635808 1610 ntTSL 5 BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 AL121723.1-201ENST00000445194 1519 ntBASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 AC138969.3-201ENST00000546612 1459 ntBASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 AC138932.2-201ENST00000548268 1459 ntBASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 AC126755.4-201ENST00000549796 1459 ntBASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 GREM1-201ENST00000560677 623 ntTSL 4 BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 AC104794.3-201ENST00000566840 1248 ntBASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 AC004790.1-201ENST00000612686 536 ntBASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 CHAF1A-201ENST00000301280 3339 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC14.78□□□□□ -0.04
ATG4BQ9Y4P1 TP73-209ENST00000603362 1668 ntTSL 5 BASIC14.77□□□□□ -0.04
ATG4BQ9Y4P1 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC14.77□□□□□ -0.04
ATG4BQ9Y4P1 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC14.77□□□□□ -0.04
ATG4BQ9Y4P1 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
ATG4BQ9Y4P1 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
ATG4BQ9Y4P1 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
ATG4BQ9Y4P1 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC14.77□□□□□ -0.04
ATG4BQ9Y4P1 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
ATG4BQ9Y4P1 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC14.77□□□□□ -0.04
ATG4BQ9Y4P1 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
ATG4BQ9Y4P1 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
ATG4BQ9Y4P1 MFF-204ENST00000353339 2186 ntTSL 5 BASIC14.77□□□□□ -0.04
ATG4BQ9Y4P1 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC14.77□□□□□ -0.04
ATG4BQ9Y4P1 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC14.77□□□□□ -0.04
ATG4BQ9Y4P1 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
ATG4BQ9Y4P1 ZDHHC11-209ENST00000511539 1303 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
ATG4BQ9Y4P1 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC14.77□□□□□ -0.04
ATG4BQ9Y4P1 ZDHHC11B-204ENST00000622126 1301 ntTSL 5 BASIC14.77□□□□□ -0.04
ATG4BQ9Y4P1 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC14.77□□□□□ -0.04
ATG4BQ9Y4P1 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
ATG4BQ9Y4P1 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
ATG4BQ9Y4P1 NME2-201ENST00000393183 568 ntTSL 2 BASIC14.77□□□□□ -0.05
ATG4BQ9Y4P1 AL133267.1-201ENST00000398220 340 ntBASIC14.77□□□□□ -0.05
ATG4BQ9Y4P1 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.05
ATG4BQ9Y4P1 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC14.77□□□□□ -0.05
ATG4BQ9Y4P1 TSPY16P-201ENST00000449843 468 ntBASIC14.77□□□□□ -0.05
ATG4BQ9Y4P1 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC14.77□□□□□ -0.05
ATG4BQ9Y4P1 TMPRSS11CP-201ENST00000453277 683 ntBASIC14.77□□□□□ -0.05
ATG4BQ9Y4P1 REEP4-207ENST00000523293 913 ntTSL 3 BASIC14.77□□□□□ -0.05
ATG4BQ9Y4P1 ARL16-202ENST00000570561 768 ntTSL 2 BASIC14.77□□□□□ -0.05
ATG4BQ9Y4P1 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.77□□□□□ -0.05
ATG4BQ9Y4P1 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.77□□□□□ -0.05
ATG4BQ9Y4P1 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.77□□□□□ -0.05
ATG4BQ9Y4P1 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.77□□□□□ -0.05
ATG4BQ9Y4P1 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC14.77□□□□□ -0.05
ATG4BQ9Y4P1 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
ATG4BQ9Y4P1 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC14.77□□□□□ -0.05
ATG4BQ9Y4P1 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC14.77□□□□□ -0.05
ATG4BQ9Y4P1 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC14.77□□□□□ -0.05
ATG4BQ9Y4P1 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC14.77□□□□□ -0.05
ATG4BQ9Y4P1 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14.77□□□□□ -0.05
ATG4BQ9Y4P1 AC006486.2-201ENST00000624246 2199 ntBASIC14.77□□□□□ -0.05
ATG4BQ9Y4P1 AC068418.2-201ENST00000577309 3703 ntBASIC14.77□□□□□ -0.05
ATG4BQ9Y4P1 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
ATG4BQ9Y4P1 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC14.77□□□□□ -0.05
ATG4BQ9Y4P1 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
ATG4BQ9Y4P1 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
ATG4BQ9Y4P1 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
ATG4BQ9Y4P1 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC14.76□□□□□ -0.05
ATG4BQ9Y4P1 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
ATG4BQ9Y4P1 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
ATG4BQ9Y4P1 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.76□□□□□ -0.05
ATG4BQ9Y4P1 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
ATG4BQ9Y4P1 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
ATG4BQ9Y4P1 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
ATG4BQ9Y4P1 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC14.76□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms