Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 AC023024.2-201ENST00000623561 1993 ntBASIC12.08□□□□□ -0.48
CCDC140Q96MF4 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 CLCN7-202ENST00000382745 4720 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC12.08□□□□□ -0.48
CCDC140Q96MF4 AC091951.1-201ENST00000512854 2465 ntBASIC12.08□□□□□ -0.48
CCDC140Q96MF4 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 MIR770-201ENST00000390219 98 ntBASIC12.07□□□□□ -0.48
CCDC140Q96MF4 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 MST1L-201ENST00000442552 2185 ntBASIC12.07□□□□□ -0.48
CCDC140Q96MF4 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 AC090142.2-201ENST00000483263 416 ntBASIC12.07□□□□□ -0.48
CCDC140Q96MF4 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 MEIS3P1-201ENST00000495167 958 ntBASIC12.07□□□□□ -0.48
CCDC140Q96MF4 RNA5SP421-201ENST00000516864 134 ntBASIC12.07□□□□□ -0.48
CCDC140Q96MF4 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 FTH1-202ENST00000526640 786 ntTSL 2 BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 AC079296.1-201ENST00000531592 560 ntTSL 3 BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 AL391069.4-201ENST00000609583 481 ntBASIC12.07□□□□□ -0.48
CCDC140Q96MF4 RNA5-8SN1-201ENST00000610460 153 ntBASIC12.07□□□□□ -0.48
CCDC140Q96MF4 RNA5-8SN5-202ENST00000612463 153 ntBASIC12.07□□□□□ -0.48
CCDC140Q96MF4 RNA5-8SN4-201ENST00000613359 153 ntBASIC12.07□□□□□ -0.48
CCDC140Q96MF4 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 RNA5-8SN5-201ENST00000619471 153 ntBASIC12.07□□□□□ -0.48
CCDC140Q96MF4 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 CICP11-201ENST00000434745 2827 ntBASIC12.07□□□□□ -0.48
CCDC140Q96MF4 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC12.07□□□□□ -0.48
CCDC140Q96MF4 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 UGT1A2P-201ENST00000454886 866 ntBASIC12.06□□□□□ -0.48
CCDC140Q96MF4 INGX-202ENST00000489074 768 ntBASIC12.06□□□□□ -0.48
CCDC140Q96MF4 REEP4-207ENST00000523293 913 ntTSL 3 BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 TBCB-211ENST00000589996 724 ntTSL 3 BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 AC000095.1-201ENST00000603208 874 ntBASIC12.06□□□□□ -0.48
CCDC140Q96MF4 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
CCDC140Q96MF4 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms