Protein–RNA interactions for Protein: Q96JB5

CDK5RAP3, CDK5 regulatory subunit-associated protein 3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3Q96JB5 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 NPHP4-201ENST00000378156 4994 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 AC074338.1-201ENST00000416825 156 ntBASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 BASP1P1-201ENST00000430708 665 ntBASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 AC092384.3-202ENST00000564646 2873 ntBASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 PPT1-215ENST00000641471 2368 ntBASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CDK5RAP3Q96JB5 CYB561D1-201ENST00000310611 5009 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
CDK5RAP3Q96JB5 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
CDK5RAP3Q96JB5 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 AC022532.1-201ENST00000624563 1728 ntBASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 GSN-206ENST00000394353 2311 ntTSL 2 BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 LINC01115-203ENST00000606068 577 ntBASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 RBM33-205ENST00000392759 1580 ntTSL 5 BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 IFNAR1-201ENST00000270139 6139 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CDK5RAP3Q96JB5 ANKEF1-201ENST00000378380 5303 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
CDK5RAP3Q96JB5 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC17.63■□□□□ 0.41
CDK5RAP3Q96JB5 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC17.63■□□□□ 0.41
CDK5RAP3Q96JB5 AC021683.3-202ENST00000592572 4440 ntTSL 5 BASIC17.63■□□□□ 0.41
CDK5RAP3Q96JB5 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC17.63■□□□□ 0.41
CDK5RAP3Q96JB5 KIF1C-201ENST00000320785 7919 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDK5RAP3Q96JB5 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDK5RAP3Q96JB5 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC17.63■□□□□ 0.41
CDK5RAP3Q96JB5 BID-213ENST00000615414 2236 ntTSL 5 BASIC17.63■□□□□ 0.41
CDK5RAP3Q96JB5 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CDK5RAP3Q96JB5 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC17.63■□□□□ 0.41
CDK5RAP3Q96JB5 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CDK5RAP3Q96JB5 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC17.63■□□□□ 0.41
CDK5RAP3Q96JB5 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC17.63■□□□□ 0.41
CDK5RAP3Q96JB5 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CDK5RAP3Q96JB5 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC17.63■□□□□ 0.41
CDK5RAP3Q96JB5 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC17.63■□□□□ 0.41
CDK5RAP3Q96JB5 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CDK5RAP3Q96JB5 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC17.63■□□□□ 0.41
CDK5RAP3Q96JB5 AC015922.1-201ENST00000421102 1152 ntBASIC17.63■□□□□ 0.41
CDK5RAP3Q96JB5 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CDK5RAP3Q96JB5 CYMP-203ENST00000474680 1263 ntBASIC17.63■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms