Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 MFF-204ENST00000353339 2186 ntTSL 5 BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 LINC00593-202ENST00000560853 1483 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LMX1AQ8TE12 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 PITPNM1-202ENST00000436757 4216 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 PRKX-201ENST00000262848 6031 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 CNN2P8-201ENST00000421872 913 ntBASIC15.13■□□□□ 0.01
LMX1AQ8TE12 AF274855.1-203ENST00000424126 800 ntTSL 3 BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 FAM197Y7-201ENST00000432892 766 ntBASIC15.13■□□□□ 0.01
LMX1AQ8TE12 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 MIR6869-201ENST00000619434 62 ntBASIC15.13■□□□□ 0.01
LMX1AQ8TE12 AC138951.2-201ENST00000623455 1161 ntBASIC15.13■□□□□ 0.01
LMX1AQ8TE12 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 PITPNM2-208ENST00000542749 6660 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC15.13■□□□□ 0.01
LMX1AQ8TE12 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 NIN-203ENST00000382041 6496 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 AAMDC-206ENST00000526415 579 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 AC023310.1-201ENST00000554836 735 ntBASIC15.12■□□□□ 0.01
LMX1AQ8TE12 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 DYNLRB2-205ENST00000568035 409 ntTSL 5 BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 AC008687.7-202ENST00000637404 953 ntBASIC15.12■□□□□ 0.01
LMX1AQ8TE12 AC068831.1-204ENST00000501381 1621 ntTSL 2 BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LMX1AQ8TE12 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC15.12■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 31.3 ms