Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 VPS53-216ENST00000574029 585 ntTSL 4 BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 ELAC1-203ENST00000588577 694 ntTSL 2 BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 AC012354.3-201ENST00000623734 483 ntBASIC9.68□□□□□ -0.86
LINC00643Q86TS7 AP002008.2-201ENST00000635926 4870 ntBASIC9.68□□□□□ -0.86
LINC00643Q86TS7 MCL1-204ENST00000620947 3626 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 C3orf18-206ENST00000449241 2365 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 FAM90A12P-201ENST00000519497 2375 ntBASIC9.68□□□□□ -0.86
LINC00643Q86TS7 FAM90A24P-201ENST00000520792 2369 ntBASIC9.68□□□□□ -0.86
LINC00643Q86TS7 TRPM5-202ENST00000528453 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 MIER2-201ENST00000264819 6884 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 KCNA1-201ENST00000382545 7997 ntAPPRIS P1 TSL 4 BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 SCN1B-202ENST00000415950 4537 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 ABI1-213ENST00000536334 3380 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 NPAS4-201ENST00000311034 3303 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 TRIM26-267ENST00000453195 3318 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 AC023794.5-201ENST00000564380 2157 ntBASIC9.68□□□□□ -0.86
LINC00643Q86TS7 MKL1-203ENST00000402042 4343 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 EIF3CL-201ENST00000380876 3085 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 TRIT1-202ENST00000372818 2034 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 TMEM131L-203ENST00000409959 5017 ntAPPRIS ALT2 TSL 5 BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 RARG-203ENST00000425354 2959 ntAPPRIS P3 TSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 RAB11FIP1-206ENST00000524118 1959 ntTSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 AC016397.2-201ENST00000624848 1985 ntBASIC9.68□□□□□ -0.86
LINC00643Q86TS7 BCAS3-221ENST00000588874 2948 ntAPPRIS ALT2 TSL 2 BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 GRIPAP1-207ENST00000593475 2908 ntTSL 5 BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 FBXO32-203ENST00000517956 6744 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 LANCL1-205ENST00000443314 4781 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 CBX3-202ENST00000396386 1857 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 EHD1-201ENST00000320631 4551 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 STRC-213ENST00000541030 5305 ntAPPRIS ALT2 TSL 5 BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 AC058822.1-201ENST00000507166 2550 ntAPPRIS P1 TSL 2 BASIC9.68□□□□□ -0.86
LINC00643Q86TS7 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 CENPL-202ENST00000356198 2357 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 COG1-201ENST00000299886 3079 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 AP002851.1-201ENST00000640504 2130 ntTSL 5 BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 RS1-201ENST00000379984 2810 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 KIAA1191-202ENST00000393725 2700 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 PRR30-201ENST00000335524 2008 ntAPPRIS P2 TSL 1 (best) BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 PP14571-202ENST00000404891 2017 ntTSL 2 BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 ADRA2B-201ENST00000620793 3371 ntAPPRIS P1 BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 GPR179-204ENST00000621958 7983 ntAPPRIS ALT2 TSL 5 BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 GREB1-206ENST00000396123 5296 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 ABAT-213ENST00000567812 1959 ntTSL 2 BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 DCAF13-201ENST00000297579 2642 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 ARMCX6-208ENST00000539247 1928 ntAPPRIS P1 TSL 4 BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 AL645939.2-201ENST00000427340 991 ntBASIC9.67□□□□□ -0.86
LINC00643Q86TS7 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 AC020765.3-201ENST00000613051 740 ntBASIC9.67□□□□□ -0.86
LINC00643Q86TS7 CREBL2-201ENST00000228865 3754 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 CCT6B-201ENST00000314144 1838 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 APBB3-202ENST00000356738 1804 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 TRIM35-201ENST00000305364 4229 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 ARID3B-206ENST00000622429 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 SUOX-208ENST00000548274 2352 ntAPPRIS P1 TSL 5 BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 HSPB7-201ENST00000311890 2892 ntAPPRIS P2 TSL 1 (best) BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 SEZ6L-206ENST00000404234 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 DLX4-206ENST00000611342 1662 ntBASIC9.67□□□□□ -0.86
LINC00643Q86TS7 ERVK13-1-205ENST00000568395 5578 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 KRT74-201ENST00000305620 2788 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 ANKMY1-208ENST00000405002 3304 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 OR2I1P-208ENST00000641137 4948 ntBASIC9.67□□□□□ -0.86
LINC00643Q86TS7 NOS3-201ENST00000297494 4388 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 AC011899.2-202ENST00000438047 4302 ntTSL 1 (best) BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 CDH11-201ENST00000268603 6857 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 INTS6-201ENST00000311234 3662 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 POM121L14P-201ENST00000406100 1558 ntBASIC9.67□□□□□ -0.86
LINC00643Q86TS7 TIGD1-201ENST00000408957 2625 ntAPPRIS P1 BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 NTNG1-206ENST00000370071 3149 ntTSL 5 BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 TRUB2-201ENST00000372890 5719 ntAPPRIS P1 TSL 1 (best) BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 ATE1-208ENST00000540606 5165 ntTSL 2 BASIC9.67□□□□□ -0.86
LINC00643Q86TS7 MAP2K4P1-202ENST00000602584 2539 ntTSL 2 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 SRPRA-206ENST00000532259 2453 ntTSL 2 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 PC-214ENST00000628663 1470 ntTSL 5 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 CTDP1-202ENST00000299543 3380 ntAPPRIS ALT2 TSL 5 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 SLC41A3-204ENST00000383598 2330 ntAPPRIS P3 TSL 2 BASIC9.66□□□□□ -0.86
LINC00643Q86TS7 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC9.66□□□□□ -0.86
Retrieved 100 of 98,524 protein–RNA pairs in 572.6 ms